PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla006956
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family LBD
Protein Properties Length: 212aa    MW: 23173.7 Da    PI: 7.3092
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla006956genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260123.69.8e-39131131100
     DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                +C aCk+lrrkC+k+C++apyf +eq +++fa+vhk+FGasn +kll+++p+ +r da  +l+yeA ar+rdPvyG+v+ i++lqqq+ +l+aela++++
  Cla006956  13 PCGACKFLRRKCVKGCIFAPYFDSEQgAAHFAAVHKVFGASNASKLLHRIPPPKRLDACVTLCYEALARVRDPVYGCVAQIFTLQQQVVNLQAELAYIQA 112
                7***********************9989********************************************************************9998 PP

     DUF260 100 e 100
                +
  Cla006956 113 K 113
                7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.35712114IPR004883Lateral organ boundaries, LOB
PfamPF031951.9E-3713111IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MSGGGGGGQG GGPCGACKFL RRKCVKGCIF APYFDSEQGA AHFAAVHKVF GASNASKLLH  60
RIPPPKRLDA CVTLCYEALA RVRDPVYGCV AQIFTLQQQV VNLQAELAYI QAKLATLQRL  120
FPPPLQDASL PTRDSLLPET IPGSDMGLMS NVPMLLDPLQ TQLGYNEMTN NFPNPIYHQD  180
QMDEDGDLQS LARELVSRYL PEVRQRPPCS QI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004145059.21e-121PREDICTED: LOB domain-containing protein 19
SwissprotO813226e-65LBD31_ARATH; LOB domain-containing protein 31
TrEMBLA0A0A0KCW11e-121A0A0A0KCW1_CUCSA; Uncharacterized protein
STRINGVIT_15s0048g00840.t013e-74(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17713493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00210.14e-64LOB domain-containing protein 31