PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla006955
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family LBD
Protein Properties Length: 240aa    MW: 24652 Da    PI: 7.5021
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla006955genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260129.61.3e-40291291100
     DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r da+ +++yeA+ar+rdPvyG+v++i++lqqq+ +l+ael +l++
  Cla006955  29 PCGACKFLRRKCVPGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVSLQAELTYLQA 128
                7***********************9989********************************************************************9987 PP

     DUF260 100 e 100
                +
  Cla006955 129 H 129
                6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.91428130IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-3929127IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MSANPSTSGG GGPGTASAGG GVGGGGGGPC GACKFLRRKC VPGCIFAPYF DSEQGAAHFA  60
AVHKVFGASN VSKLLLHIPV HKRLDAVVTI CYEAQARLRD PVYGCVAHIF ALQQQVVSLQ  120
AELTYLQAHL ATLELPSPPN PPPPPPPPSF PAQPPLSISD LPSASSLPAT YDLSSLFDPM  180
AQPAWAMQQQ RLDPRQFAGG GGGSSTAAGE GDLQALAREL LHRHGALPCS DASSPQSLSK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00314DAPTransfer from AT2G45420Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6843371e-151LN684337.1 Cucumis melo genomic scaffold, unassembled_sequence31840.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004145058.11e-118PREDICTED: LOB domain-containing protein 18-like
SwissprotO221312e-83LBD18_ARATH; LOB domain-containing protein 18
TrEMBLA0A0A0KEN51e-118A0A0A0KEN5_CUCSA; Uncharacterized protein
STRINGVIT_15s0048g00830.t011e-101(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17713493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45420.15e-77LOB domain-containing protein 18