PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla005993
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family LBD
Protein Properties Length: 235aa    MW: 25391.6 Da    PI: 7.5022
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla005993genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.45.5e-39261261100
     DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                +C aCk+lrrkC++dC++apyf++eq +++fa++hk+FGasnv+kll ++p ++r +a+ +++yeA+ar++dPvyG+v++i++lqqq++ l+++l ++k+
  Cla005993  26 PCGACKFLRRKCVADCIFAPYFCSEQgAARFAAIHKVFGASNVSKLLLHVPVHDRCEAVVTIAYEAQARIHDPVYGCVAHIFALQQQVAYLQTQLMQAKA 125
                7*************************89*******************************************************************99998 PP

     DUF260 100 e 100
                +
  Cla005993 126 Q 126
                7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.67825127IPR004883Lateral organ boundaries, LOB
PfamPF031951.3E-3726124IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MASSSSSSSA NTSVSGSGGG GGSGSPCGAC KFLRRKCVAD CIFAPYFCSE QGAARFAAIH  60
KVFGASNVSK LLLHVPVHDR CEAVVTIAYE AQARIHDPVY GCVAHIFALQ QQVAYLQTQL  120
MQAKAQLAQT LMDSGGNMEI QWTGNFNNNL FNGIPNNYQT QIMNNPAVSP QSSLESAANN  180
DEALLFINNQ NHLHESQSRS PEESQFLQPF PRKKLPSSHA DLGELQALAL RMMRN
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00309DAPTransfer from AT2G42430Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN7132581e-118LN713258.1 Cucumis melo genomic chromosome, chr_4.
GenBankLN6818351e-118LN681835.1 Cucumis melo genomic scaffold, anchoredscaffold00064.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004152037.11e-132PREDICTED: LOB domain-containing protein 16
SwissprotQ9SLB71e-81LBD16_ARATH; LOB domain-containing protein 16
TrEMBLA0A0A0LAE81e-132A0A0A0LAE8_CUCSA; Uncharacterized protein
STRINGGLYMA03G31830.11e-85(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45093358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42430.13e-78lateral organ boundaries-domain 16