PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla003994
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family LBD
Protein Properties Length: 220aa    MW: 24257.1 Da    PI: 4.3247
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla003994genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260113.91e-35131131100
     DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                +C aCk+lrrkC+++Cv+ap f  ++ +++fa+vhk+FGasnv+kll +lp + r++a+ +++yeA  r+rdP yG+v++i++lqq++++l++e++ l++
  Cla003994  13 SCGACKFLRRKCSDQCVFAPFFSYDEaTSHFAAVHKVFGASNVSKLLLHLPIHIRSHAALTVAYEALERMRDPTYGCVAHIFALQQEVASLQEEIEILGS 112
                6**********************98868*******************************************************************99988 PP

     DUF260 100 e 100
                +
  Cla003994 113 Q 113
                7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.58212114IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-3313110IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MTGLNSSNFS SSSCGACKFL RRKCSDQCVF APFFSYDEAT SHFAAVHKVF GASNVSKLLL  60
HLPIHIRSHA ALTVAYEALE RMRDPTYGCV AHIFALQQEV ASLQEEIEIL GSQIANFTAT  120
GGSVAGVENP FIDQLQVSQQ LKDFGMMNRD DYQNELLSEL PYQSFDNIQN DNNGQMISPL  180
FCLGEEDGVF GFCSSNDVVE RSACDVSFEE SFVGYPWVVG
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN7132641e-104LN713264.1 Cucumis melo genomic chromosome, chr_10.
GenBankLN6818971e-104LN681897.1 Cucumis melo genomic scaffold, anchoredscaffold00063.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004147712.11e-137PREDICTED: LOB domain-containing protein 33
SwissprotQ9LHS81e-58LBD33_ARATH; LOB domain-containing protein 33
TrEMBLA0A0A0KNX81e-137A0A0A0KNX8_CUCSA; Uncharacterized protein
STRINGPOPTR_0010s20800.18e-63(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91963242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.11e-58LOB domain-containing protein 33