PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla003347
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family NAC
Protein Properties Length: 327aa    MW: 37306.2 Da    PI: 6.7432
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla003347genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM159.71.2e-49241573128
        NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel... 99 
                pGfrFhPtdeelv +yLkkk+e++++++ + i+++diyk++PwdLpk + ++ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d++++s+++++   
  Cla003347  24 PGFRFHPTDEELVGFYLKKKIENHPVSM-QLIRQLDIYKYDPWDLPKLAWTGEKEWYFYCQRDRKYRNSARPNRVTGAGFWKATGTDRPIYSTNSSNfks 122
                9************************999.89***************8777899***************************************94433455 PP

        NAM 100 ......vglkktLvfykgrapkgektdWvmheyrl 128
                      +glkk+Lvfy+gra+k+ ktdW+mhe+rl
  Cla003347 123 ksktiiIGLKKSLVFYTGRASKALKTDWMMHEFRL 157
                556677***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.24E-5620174IPR003441NAC domain
PROSITE profilePS5100553.98522174IPR003441NAC domain
PfamPF023652.3E-2524157IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MEERNELVGS VEEDDDVMLP LPLPGFRFHP TDEELVGFYL KKKIENHPVS MQLIRQLDIY  60
KYDPWDLPKL AWTGEKEWYF YCQRDRKYRN SARPNRVTGA GFWKATGTDR PIYSTNSSNF  120
KSKSKTIIIG LKKSLVFYTG RASKALKTDW MMHEFRLPDS PPNDSWAICR IFKKTNTSAA  180
QRGASSSLPK QYEKLENKEY STTINVPLST YDPFDYLEGK LPELSIPNEP FIIAPPPMEM  240
SDIAKSAMDV SSILFNISSS LLGEFGSTPA THISDPFTSS FHYHDHGHAH PDTFSSPTTL  300
LQQNALPLEH SHPCNSPLSS IWDKFLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-5281824171NO APICAL MERISTEM PROTEIN
1ut4_B1e-5281824171NO APICAL MERISTEM PROTEIN
1ut7_A1e-5281824171NO APICAL MERISTEM PROTEIN
1ut7_B1e-5281824171NO APICAL MERISTEM PROTEIN
3swm_A2e-5281827174NAC domain-containing protein 19
3swm_B2e-5281827174NAC domain-containing protein 19
3swm_C2e-5281827174NAC domain-containing protein 19
3swm_D2e-5281827174NAC domain-containing protein 19
3swp_A2e-5281827174NAC domain-containing protein 19
3swp_B2e-5281827174NAC domain-containing protein 19
3swp_C2e-5281827174NAC domain-containing protein 19
3swp_D2e-5281827174NAC domain-containing protein 19
4dul_A1e-5281824171NAC domain-containing protein 19
4dul_B1e-5281824171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008441931.21e-156PREDICTED: protein FEZ-like
SwissprotQ9ZVH02e-82FEZ_ARATH; Protein FEZ
TrEMBLA0A1S3B4231e-155A0A1S3B423_CUCME; protein FEZ-like
STRINGXP_008441931.11e-156(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20133490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.14e-82NAC family protein
Publications ? help Back to Top
  1. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]