PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla003232
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bHLH
Protein Properties Length: 538aa    MW: 58476.4 Da    PI: 5.9678
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla003232genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.71.6e-11354396754
                HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
        HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A++Y+k+L
  Cla003232 354 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIDYLKEL 396
                79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.682347396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-16350415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-9353396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-14353402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-15354409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.78E-13354400No hitNo description
SuperFamilySSF550212.11E-5465527No hitNo description
PROSITE profilePS516719.553466538IPR002912ACT domain
CDDcd048735.95E-8467527No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010440Biological Processstomatal lineage progression
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050826Biological Processresponse to freezing
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MLPKSTGILW LDADHDDSSS WSRTNHHTDD AIAISAAGSI SSFKSILESD WYINSTTPLN  60
PSHQDFHSLS SHPDIRDLPF SSNPSDNFLL HPIDSSSSCS PSHAFALDPS HSHSSLPPHK  120
SSCFSSLLNV VCSNNFDNAF DLGGESGLLG SYPGNQASNS SVLMGFTGIS SLPQIGNQEL  180
SLNNSEFPAT RLLPVADNPP AFGAGFNPAA AFESYDACGN ALFQNRSKVL RPLEVFPQVG  240
AQPTLFQKRA AHRVGSAGPD KLESLEVSGF KLGEGSMWTP NLESLRKMTG DEDIEDGSVD  300
VSRLNYDSDE PNEYNKQEDN VNTKNCGSNS NANSTVTGGD QKGKKKGLPA KNLMAERRRR  360
KKLNDRLYML RSVVPKISKM DRASILGDAI DYLKELLQRI NDLHNELEST PPGSLLQPSA  420
SFHPLTPTLP TLPCRVKEEL CPSSLSSPNT QPARVEVRVR EGRAVNIHMF CSRKPGLLLS  480
IMRALDNLGL DIQQAVISCF NGFALDVFRA EQSKEGQEIL PEQIKAVLLD SAGLHGII
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1343361KKKGLPAKNLMAERRRRKK
2355362ERRRRKKL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
GenBankLN6818570.0LN681857.1 Cucumis melo genomic scaffold, anchoredscaffold00023.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011651587.10.0PREDICTED: transcription factor ICE1
SwissprotQ9LSE21e-155ICE1_ARATH; Transcription factor ICE1
TrEMBLA0A0A0LBB40.0A0A0A0LBB4_CUCSA; Uncharacterized protein
STRINGVIT_14s0068g01200.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24143482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.41e-129bHLH family protein