PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla002917
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family LBD
Protein Properties Length: 231aa    MW: 24484.4 Da    PI: 6.9385
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla002917genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.21.5e-39371381101
     DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                +C aCk+lrrkC+++C++ap+f+++q +++fa+vhk+FGasnv+kll ++p ++r+da+ ++ yeA+ar++dPvyG+v+++l+lqqq+++l+aela++++
  Cla002917  37 PCGACKFLRRKCVSGCIFAPHFASDQgAARFAAVHKVFGASNVSKLLLHIPVSRRNDAVVTISYEAQARLSDPVYGCVSTVLALQQQVASLQAELAAVQA 136
                7*************************89**********************************************************************99 PP

     DUF260 100 el 101
                +l
  Cla002917 137 QL 138
                85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.93236138IPR004883Lateral organ boundaries, LOB
PfamPF031951.3E-3837135IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:1900150Biological Processregulation of defense response to fungus
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MADADQFPRR KPLGNKRASA ANRNPDSATA TVTALAPCGA CKFLRRKCVS GCIFAPHFAS  60
DQGAARFAAV HKVFGASNVS KLLLHIPVSR RNDAVVTISY EAQARLSDPV YGCVSTVLAL  120
QQQVASLQAE LAAVQAQLIS SRLAFAAAIQ NSQPSQVGAL QPAYSNNSSI SVSASTSAHN  180
AINLSSFASN YDLPTETAPS PHHLEPLHLP HQPIEDEEDE ENSQLPAIFA D
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN7132581e-103LN713258.1 Cucumis melo genomic chromosome, chr_4.
GenBankLN6818411e-103LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004136784.11e-145PREDICTED: LOB domain-containing protein 20
SwissprotQ9SRV31e-75LBD20_ARATH; LOB domain-containing protein 20
TrEMBLA0A0A0LCJ91e-145A0A0A0LCJ9_CUCSA; Uncharacterized protein
STRINGPOPTR_0013s06070.11e-91(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77153146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.12e-54LOB domain-containing protein 20