PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla002645
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bHLH
Protein Properties Length: 571aa    MW: 62843.4 Da    PI: 5.7397
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla002645genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.81.5e-11366408754
                HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
        HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A+eY+k+L
  Cla002645 366 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 408
                79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.58359408IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-16362425IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-9365408IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-14365414IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-15366420IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.24E-12366412No hitNo description
CDDcd048733.83E-7479534No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 571 aa     Download sequence    Send to blast
MLSRVGNVLW MENRDDEDSA SWTKNNSDHN HLNHPANCSV LDNKDEITSL STFKSMLEVE  60
DDWCISANAL HNHNHHTDIN DITFSQNFTD PPDNLLLPPG DSSSSCSPSS SVFNNIDPSQ  120
LRFFLPQTRT LSSLHKVISN NPLDHGFDLG AEVGFLDVQA SNASTLLNDG GGLLTGFTDL  180
SPTSQMNTPN LCLGSQLTAP NVSPMTENCS GLAGFQSFDE NLGNALLLNR SKLLRPLESF  240
PTVGAQPTLF QKRAALRKSL ADKGSNLGVL SPDGGWFSNR IEGGIGKNEV GDENGKKRKM  300
IYADELQDTS IDTSRFNYDS DEFTENTNTK LDESGRNVGN TSNANSTVTG GDQKGKKKGL  360
PAKNLMAERR RRKKLNDRLY MLRSVVPKIS KMDRASILGD AIEYLKELLQ RINDLHNELE  420
FAPSGAALTP GASFHPLTPT PPSLSSRIKE ELCPSSFPSP NGQPARVEVR VREGRAVNIH  480
MFCGRRPGLL LSTVRALDNL GLDIQQAVIS CFNGFAMDIF RAEAEFYVVH QENNFIVDSE  540
IFDQHAEQIT QGPLPTVLLH KLSFRYLIAT L
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1355373KKKGLPAKNLMAERRRRKK
2367374ERRRRKKL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
GenBankLN6819320.0LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004154005.10.0PREDICTED: transcription factor ICE1-like isoform X1
SwissprotQ9LSE21e-119ICE1_ARATH; Transcription factor ICE1
TrEMBLA0A0A0LTY10.0A0A0A0LTY1_CUCSA; Uncharacterized protein
STRINGPOPTR_0015s11650.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24143482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.43e-88bHLH family protein