PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla002323
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family TCP
Protein Properties Length: 241aa    MW: 28002.1 Da    PI: 10.0495
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla002323genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP136.91.7e-42892222127
        TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.......eaesssssasnsssgkaaksa 94 
                 gkkdrhski+T++g+RdRR+Rls+++a++fFdLqd+LGfdk+s+tieWLl +++ aik+l +t +s++s +        ++s+++s+ n++ ++++++ 
  Cla002323  89 RGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASQTIEWLLLNSNSAIKDLKQTYFSNNSGVshgsvysGQSSEVVSEINNQDQEQEEAG 188
                68**************************************************************555554442233445455555555556666666666 PP

        TCP  95 a.kskksqksaasalnlakesrakarararertr 127
                  ++++++k+  + + + +e r +ararar+rt 
  Cla002323 189 GfTGSFKDKKGRQLRTVGREARDRARARARQRTL 222
                6799********9******************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.8E-3990225IPR005333Transcription factor, TCP
PROSITE profilePS5136935.09291149IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MYQQEQYEDQ LINSYDDLHF PHPFLDDDDL FLSHFLSQQQ QQQQLFEQEE KQDHEVDETT  60
RKMKTKTKKK KVSGGNSSRK NGRSCTKRRG KKDRHSKIYT AQGPRDRRMR LSLQIARKFF  120
DLQDMLGFDK ASQTIEWLLL NSNSAIKDLK QTYFSNNSGV SHGSVYSGQS SEVVSEINNQ  180
DQEQEEAGGF TGSFKDKKGR QLRTVGREAR DRARARARQR TLLKNTSFLQ PPINLDHHLS  240
G
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1209219RDRARARARQR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818951e-97LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005.
GenBankLN7132631e-97LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011656248.12e-83PREDICTED: transcription factor TCP12
TrEMBLA0A0A0KRR25e-82A0A0A0KRR2_CUCSA; Uncharacterized protein
STRINGXP_008437699.16e-68(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17383294
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.12e-29TCP domain protein 12