PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.8632s0019.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bZIP
Protein Properties Length: 679aa    MW: 74043.2 Da    PI: 6.5768
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.8632s0019.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.34.6e-10192239350
                          XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 
                          ++k+  r ++NRe+A+ sR+RKk+++eeLe+kvk++ a   +L  ++ 
  Cagra.8632s0019.1.p 192 DDKKRLRQIRNRESAQLSRLRKKQQTEELERKVKSMNATIAELNGKIA 239
                          79*********************************9998877776665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1708.6E-13187252No hitNo description
SMARTSM003381.3E-11190254IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.048192255IPR004827Basic-leucine zipper domain
PfamPF001709.3E-9193251IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.13E-10194252No hitNo description
CDDcd147043.36E-15195245No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006990Biological Processpositive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response
GO:0009408Biological Processresponse to heat
GO:0005635Cellular Componentnuclear envelope
GO:0005654Cellular Componentnucleoplasm
GO:0005783Cellular Componentendoplasmic reticulum
GO:0016020Cellular Componentmembrane
GO:0048471Cellular Componentperinuclear region of cytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 679 aa     Download sequence    Send to blast
MVTTESTSVI VPPPETPNLN PNMLSDSDII SFPPLDPLFL SDSDPISMDA PLSDLDFLLD  60
DENGDFADFD FPFDSSDDFF DFDLAEPAAA VIPEEMGNNR SNLDSSENRD GDGGAEGRSD  120
SVHSQVSSQG SKTTFVSDTV DALSSPESSN HQKSSVSKRK KEKEDSGVEH RSRKYQKSDD  180
KSVATNNEED DDDKKRLRQI RNRESAQLSR LRKKQQTEEL ERKVKSMNAT IAELNGKIAY  240
VMAENVALRQ QMAVASGAPP MNPYMAAPPL PYQWMPYPPY PVRGYGSQTP LVPIPKLTPK  300
PVSSCRPKKT ESKKNEGKSK LKKVASISFI GILFFVFLFG TLVPFMNVNY GGESGSFGGL  360
SKYDGHRYYH EHKGKVLMVG DGSDVRRESG ISDGHLHSSR RVHGDSDSCG GVDYNPHSKI  420
EGRPSSVSNA SDPLFASLYV PRNNGLVKID GNLIIHSVLA SEKATALAKK NITATVKSKE  480
PDLTIPGALS SALAVPELRG NAAMLPQSMA LSSEGKRLHQ WFHEGGSGTL MDYSMCTEVF  540
QFDIAPGAIV PSSVSNISAE QLQNVTTHGK RMKNRRILEG LPVSRLASEL NITGTQPNKE  600
TQNKTFNGNT KNKPNSSSSM VVSVLLDPRE IVDSETDRVV PPNPKSLSRI FVVVLLDSVK  660
YVTYSCVLPR SGLHLVAT*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00345DAPTransfer from AT3G10800Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0025020.0BT002502.1 Arabidopsis thaliana putative bZIP transcription factor (At3g10800) mRNA, complete cds.
GenBankAK2269280.0AK226928.1 Arabidopsis thaliana mRNA for bZIP transcription factor AtbZip28, complete cds, clone: RAFL09-25-P21.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006296784.10.0hypothetical protein CARUB_v10016005mg
SwissprotQ9SG860.0BZP28_ARATH; bZIP transcription factor 28
TrEMBLR0G2L90.0R0G2L9_9BRAS; Uncharacterized protein
STRINGfgenesh2_kg.3__1116__AT3G10800.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM143971822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10800.10.0bZIP family protein