PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.8287s0005.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 282aa    MW: 31283.4 Da    PI: 8.419
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.8287s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.90.0015217238323
                          ETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                          Cp C+  Fs+  +L+ H  + H
  Cagra.8287s0005.1.p 217 CPQCNAKFSSVTTLVEHVEKtH 238
                          *****************99888 PP

2zf-C2H2201.9e-06253275223
                          EETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                          +Cp+C++ F+++ +L++Hi + H
  Cagra.8287s0005.1.p 253 VCPKCSRGFRDPVDLVNHIERdH 275
                          7******************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183105.49E-12457No hitNo description
PROSITE profilePS510397.821056IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.101.1E-101152IPR000058Zinc finger, AN1-type
SMARTSM001548.1E-71352IPR000058Zinc finger, AN1-type
PfamPF014282.9E-131349IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.105.0E-1091142IPR000058Zinc finger, AN1-type
SuperFamilySSF1183101.96E-893141No hitNo description
PROSITE profilePS510398.18498147IPR000058Zinc finger, AN1-type
SMARTSM001540.0089101142IPR000058Zinc finger, AN1-type
PfamPF014284.1E-8101140IPR000058Zinc finger, AN1-type
PROSITE profilePS501579.349215243IPR007087Zinc finger, C2H2
SMARTSM003550.033215238IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280217238IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.2E-4219238IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.829252280IPR007087Zinc finger, C2H2
SMART