PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.6943s0031.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 269aa    MW: 29046.8 Da    PI: 8.8137
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.6943s0031.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.00011101123123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ykC+ Cgk F++   L  H  +H
  Cagra.6943s0031.1.p 101 YKCSVCGKAFPSYQALGGHKASH 123
                          9***********99999998887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.801101128IPR007087Zinc finger, C2H2
SuperFamilySSF576679.93E-9101123No hitNo description
SMARTSM003550.0043101123IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.5E-4101123IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.7E-13101124IPR007087Zinc finger, C2H2
PROSITE patternPS000280103123IPR007087Zinc finger, C2H2
SuperFamilySSF576679.93E-9154181No hitNo description
SMARTSM003550.17159181IPR015880Zinc finger, C2H2-like
PfamPF139128.8E-14159183IPR007087Zinc finger, C2H2
PROSITE profilePS501579.099159181IPR007087Zinc finger, C2H2
PROSITE patternPS000280161181IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009737Biological Processresponse to abscisic acid
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010200Biological Processresponse to chitin
GO:0042538Biological Processhyperosmotic salinity response
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding