PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.6164s0006.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family LBD
Protein Properties Length: 236aa    MW: 25863.6 Da    PI: 8.3023
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.6164s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26096.62.6e-304106198
               DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                          +C++C+vlr++C+++C ++p++     +++q++++ +++k++G++ +++ll++ p++ r+++++sl+yeA+ r+ +P+yG+vg+++++++
  Cagra.6164s0006.1.p   4 SCNGCRVLRKGCSENCSIRPCLqwiksAESQANATVFLAKFYGRAGLMNLLNTGPDHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGNW 93 
                          6*********************9999777889********************************************************** PP

               DUF260  86 qleqlkaelallk 98 
                          +l+q+++e+++++
  Cagra.6164s0006.1.p  94 HLCQAAVEAVMRG 106
                          *******998766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.0213109IPR004883Lateral organ boundaries, LOB
PfamPF031959.1E-254104IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSENCS IRPCLQWIKS AESQANATVF LAKFYGRAGL MNLLNTGPDH  60
LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GNWHLCQAAV EAVMRGSPVT PIAFDAAVTG  120
QAPPYNNNNK LCDIRHVSSK EESVKRRSRG ACKEERNVRS QSHESSLSHE SPVSSEGTTT  180
EEPKTWIGLE LTLGLEPLAR GSHVVVPMKK RKLERCGTSE DEDTCKIELG LVCSE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0116500.0BT011650.1 Arabidopsis thaliana At1g67100 mRNA, complete cds.
GenBankBT0109430.0BT010943.1 Arabidopsis thaliana At1g67100 gene, complete cds.
GenBankAB4738700.0AB473870.1 Arabidopsis thaliana ASL37 mRNA for ASYMMETRIC LEAVES2-like 37 protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006301307.11e-175hypothetical protein CARUB_v10021721mg
SwissprotQ9ZW961e-152LBD40_ARATH; LOB domain-containing protein 40
TrEMBLR0I7X51e-175R0I7X5_9BRAS; Uncharacterized protein
STRINGAl_scaffold_0002_13371e-154(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM152481518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67100.11e-139LOB domain-containing protein 40