PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.5494s0009.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 204aa    MW: 22655.8 Da    PI: 9.8335
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.5494s0009.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.0012527123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         +kC+ C+ksF +   L  H+++H
  Cagra.5494s0009.1.p  5 HKCKLCSKSFCNGRALGGHMKSH 27
                         79*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.15E-5328No hitNo description
PfamPF139126.3E-6527IPR007087Zinc finger, C2H2
PROSITE profilePS501579.598527IPR007087Zinc finger, C2H2
PROSITE patternPS000280727IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MQNKHKCKLC SKSFCNGRAL GGHMKSHLVS SQPSTRKKLA DSVYSSSCSS SDGKSLVYGL  60
RENPRKSFRV FNPDPESSTV YNSETETEPE SGDPVKKRVR AEVSKKKKKS TKRVFANSKK  120
QKTSHESPEP ARSSVSDGSP EQDLAMCLMM LSRDSRELEI KLIKPSEETK PEQIHFPELR  180
RCMIDLNLPP PQEAEAVTVV SAI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.5494s0009.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1615440.0AL161544.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 44.
GenBankBT0041860.0BT004186.1 Arabidopsis thaliana clone RAFL15-32-J24 (R50122) unknown protein (At4g16610) mRNA, complete cds.
GenBankBT0053920.0BT005392.1 Arabidopsis thaliana clone U50122 unknown protein (At4g16610) mRNA, complete cds.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBankZ973410.0Z97341.2 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006284444.21e-146zinc finger protein ZAT9
TrEMBLR0F6881e-144R0F688_9BRAS; Uncharacterized protein (Fragment)
STRINGCagra.5494s0009.1.p1e-146(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM95101421
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16610.11e-106C2H2-like zinc finger protein