PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.5456s0001.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bZIP
Protein Properties Length: 327aa    MW: 35331.4 Da    PI: 8.8452
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.5456s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1482.6e-15164215455
                          XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 
                          +kr +r+ +NRe+ArrsR+RK+a + eLe+ v +L  eN++L k l   +++
  Cagra.5456s0001.1.p 164 VKRVKRMLSNRESARRSRRRKQAHLSELETQVSQLRVENSKLMKGLTDVTQT 215
                          79****************************************9988776665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003386.2E-18161225IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.909163214IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.3E-11163215No hitNo description
PfamPF001701.7E-13164211IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.57E-12164215No hitNo description
PROSITE patternPS000360168183IPR004827Basic-leucine zipper domain
PfamPF124984.7E-12232280IPR020983Basic leucine-zipper, C-terminal
PfamPF124981.7E-5287321IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MEKVFSGEDI SGNINWSPVN GTTTAMNRSA SEWAFHRFIQ ESSAAAADDD ANAGDSTTTT  60
VCGVSVSSPP NVPVDSEEYR AFLKSKLNLA CAAVAMKRGS FIKPQDTSGR SDNGGVYTTN  120
TSEQGSLASS KASPMMSSAI TSGSELSGDE EEADGETNMN PTNVKRVKRM LSNRESARRS  180
RRRKQAHLSE LETQVSQLRV ENSKLMKGLT DVTQTFNDAA VENRVLKANI ETLRAKVKMA  240
EETVKRLTGF NPMFHTIPQI ATTVSLPTET SNSLDTTSSH VTTPEPVSSG NKSKGLIGCK  300
MNRTASMRRV ESLEHLQKRI RSVGDQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1177184RRSRRRKQ
2179184SRRRKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00040PBMTransfer from AT5G28770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3171690.0AK317169.1 Arabidopsis thaliana AT5G28770 mRNA, complete cds, clone: RAFL21-54-H13.
GenBankAJ0108580.0AJ010858.1 Arabidopsis thaliana mRNA for bZIP protein BZ3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006288214.10.0hypothetical protein CARUB_v10001450mg
SwissprotB9DGI80.0BZP63_ARATH; Basic leucine zipper 63
TrEMBLR0FFU10.0R0FFU1_9BRAS; Uncharacterized protein
STRINGfgenesh2_kg.6__2797__AT5G28770.20.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM68462743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28770.21e-161bZIP family protein