PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.4440s0003.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family TCP
Protein Properties Length: 174aa    MW: 19355.8 Da    PI: 9.6568
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.4440s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP97.42.7e-3012137389
                  TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..ssssaseceaesssssasnsssg.. 88 
                          +++++h+++h  vggRdRR+Rl+a++a ++F+L++eLGf +d++t++WLlq+a+pai ++tg   ++++++  +++++         +  
  Cagra.4440s0003.1.p  12 KATRSHKDRHVRVGGRDRRIRLPANVAPQLFKLTKELGFHTDGETVNWLLQNAEPAIFAATGHgiNTTPNNVINSNNNI--------Hry 93 
                          5789***********************************************************7744444333111111........111 PP

                  TCP  89 ...........................................k 89 
                                                                      
  Cagra.4440s0003.1.p  94 slisgnnctinniftctgvntghpemvfpgttmkehgtsstfpV 137
                          22222233444555555555555555555554444444444441 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.5E-2616125IPR005333Transcription factor, TCP
PROSITE profilePS5136921.861771IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MVSRKEMKNQ QKATRSHKDR HVRVGGRDRR IRLPANVAPQ LFKLTKELGF HTDGETVNWL  60
LQNAEPAIFA ATGHGINTTP NNVINSNNNI HRYSLISGNN CTINNIFTCT GVNTGHPEMV  120
FPGTTMKEHG TSSTFPVKAE EDVPSQNPQQ QPQGPQLGFE CVKMEKKSYV WSE*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00390DAPTransfer from AT3G45150Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006292227.12e-86hypothetical protein CARUB_v10018433mg, partial
SwissprotQ9M1U41e-54TCP16_ARATH; Transcription factor TCP16
TrEMBLR0HIU42e-86R0HIU4_9BRAS; Uncharacterized protein (Fragment)
STRINGscaffold_501366.16e-62(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM157501016
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45150.16e-31TCP domain protein 16