PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.4348s0009.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family TCP
Protein Properties Length: 257aa    MW: 27439.4 Da    PI: 10.1467
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.4348s0009.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP123.52.3e-38301503131
                  TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaak 92 
                          +kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as+++a+ s           a++
  Cagra.4348s0009.1.p  30 VKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTASVSIR--------GANS 111
                          79*************************************************************999997772222222........2222 PP

                  TCP  93 saakskksqksaasalnlakesrakarararertrekmr 131
                          ++ +s+ ++k++++ l  +      +r ra e t+ +++
  Cagra.4348s0009.1.p 112 TSLSSSLDHKPTTTLLGSSSPFILGKRVRADEDTHHNNS 150
                          333333333333333333333334444444443333222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.7E-3435154IPR005333Transcription factor, TCP
PROSITE profilePS5136927.8923589IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MSNNNNNDVG VMISSNGSAL IEQQQAPVVV KKPPAKDRHS KVDGRGRRIR MPIICAARVF  60
QLTRELGHKS DGQTIEWLLR QAEPSIIAAT GTGTTPASFS TASVSIRGAN STSLSSSLDH  120
KPTTTLLGSS SPFILGKRVR ADEDTHHNNS SNSNGSGGNN KDETFTTTPG GFWAVPARPD  180
FGQVWSFTGG VPQEMFLQQQ HHHQQPLFVH QQQQQQAAMG EASAARVGNY LPGHLNLLAS  240
LSGGSPGSGR REDDPR*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00524DAPTransfer from AT5G23280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006288297.11e-146hypothetical protein CARUB_v10001541mg
SwissprotQ9FMX21e-134TCP7_ARATH; Transcription factor TCP7
TrEMBLR0H8F71e-146R0H8F7_9BRAS; Uncharacterized protein
STRINGAT5G23280.11e-132(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17822685
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.11e-96TCP family protein