PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.4247s0002.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family TCP
Protein Properties Length: 321aa    MW: 33904.1 Da    PI: 6.097
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.4247s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP87.14.1e-2711022489
                  TCP  24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg........................ 88 
                          ++a+caar+F+L++eLG+++d++tieWLlqqa+pai ++tgt++++a+++  ++s +ss+s+ s++                        
  Cagra.4247s0002.1.p   1 MPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIVAATGTGTIPANFStLSVSLRSSGSTLSAPpskslplygalglthhhhqhqhqh 90 
                          9*****************************************999999988888888888855555666666776666655444344444 PP

                  TCP  89 ...........k 89 
                                     +
  Cagra.4247s0002.1.p  91 qydeqggggafA 102
                          444444544441 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136921.287139IPR017887Transcription factor TCP subgroup
PfamPF036341.0E-281146IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001047Molecular Functioncore promoter binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MPALCAARVF QLTRELGHKS DGETIEWLLQ QAEPAIVAAT GTGTIPANFS TLSVSLRSSG  60
STLSAPPSKS LPLYGALGLT HHHHQHQHQH QYDEQGGGGA FATAPLLGFH HHLQQQQAPV  120
ETIPDGESFS RKRYRSVDLS KENDDQKQNE SKSLKESDPA AAPMWAVAPT SRASGGNTFW  180
MLPVPTTAGN QMESSSNNNN ITAGHRAPMW PFVNSAGAGG GGGGGGATHF MAGTGFSFPM  240
DQYRGSPLQL GSFVAQPQPT QNLGLSMPDS NLGMLAALNA AYSRGGNGNA NAEQAVEHQE  300
KPQQSEHDED SREDNSNSSE *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006302348.10.0hypothetical protein CARUB_v10020411mg
SwissprotQ9C5181e-177TCP8_ARATH; Transcription factor TCP8
TrEMBLR0GHN80.0R0GHN8_9BRAS; Uncharacterized protein
STRINGfgenesh2_kg.2__549__AT1G58100.11e-177(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102182433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.11e-147TCP family protein