PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.4237s0016.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family FAR1
Protein Properties Length: 711aa    MW: 82106.2 Da    PI: 6.6329
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.4237s0016.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1691.1e-21100183189
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                          ++Yn YA+evGF+vr+++s  ++r++e + + ++Cs +g+++ ++ +     r r+etrtgC a++++++ ++++w+v ++ l+HnH l
  Cagra.4237s0016.1.p 100 NYYNCYATEVGFRVRVKNSWFKRRSKEKYGAVLCCSSQGFKRINDVN-----RVRKETRTGCPAMIRMRQVDSKRWRVLEVTLDHNHLL 183
                          69*****************************************9988.....999********************************87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.3E-19100183IPR004330FAR1 DNA binding domain
PfamPF105515.7E-24303395IPR018289MULE transposase domain
PROSITE profilePS509669.606590626IPR007527Zinc finger, SWIM-type
PfamPF044349.0E-5598622IPR007527Zinc finger, SWIM-type
SMARTSM005751.1E-6601628IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 711 aa     Download sequence    Send to blast
MERSESVDED VQASEYLQND EIPERDDPLS DGGCALPIDE ALVCSSDHEI DVGFCQDQER  60
KSEDDATGEF DEQSGLLAER KDFDAPAVGM EFESYDDAYN YYNCYATEVG FRVRVKNSWF  120
KRRSKEKYGA VLCCSSQGFK RINDVNRVRK ETRTGCPAMI RMRQVDSKRW RVLEVTLDHN  180
HLLGAKLYKS VKKNGTGTKR KCVSSPVSDA KTIKLYRARV MDTENSVDPN STLKKQFQNS  240
AGSPDLLNLK KGDSAAIYNY FCRMQLTNPN FFYLMDVNDE GQLRNVFWAD AFSKISCSYF  300
GDVIFIDNSY ISGKFEIPLV TFTGVNHHGQ TTLLSCGLLA GETIESYHWL LKVWYNVMKC  360
SPQTIVTDRC KPLEAAISQV FPRSHHRFTL THIMRKIPEK LGGLHNYDGV RKAFTKAVYE  420
TLKVVEFEAA WGFMVHNFGV IDNEWLRSLY EERVKWAPVY LKDTFFAGIA AAHPGETLNP  480
FFERYVHKQT PLKEFLDKYE LALQKKHKEE TLSDIESLTL NTLELKTKCS FETQLCRIYT  540
RNMFKKFQVE VEEMYSCFST TQLHVDGPFV IFLVKERVQG ESNRREIRDF EVLYNRSVGE  600
VRCICSCFNF YGYLCRHALC VLNFNGVEEM PLRYILPRWR KDYKRVHFAD NGLTTGFVDG  660
TDRVQWFDQL YKNALQLVEE GAVSLNHYKV AMQSLEQSLD KVHSVEEKQE *
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269|PubMed:15591448}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.4237s0016.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0807750.0AY080775.1 Arabidopsis thaliana unknown protein (At1g52520) mRNA, complete cds.
GenBankAY1337760.0AY133776.1 Arabidopsis thaliana clone U10495 unknown protein (At1g52520) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006306897.10.0protein FAR1-RELATED SEQUENCE 6
SwissprotQ9SSQ40.0FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBLR0IMD00.0R0IMD0_9BRAS; Uncharacterized protein
STRINGCagra.4237s0016.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM107882531
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.10.0FAR1-related sequence 6
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]