PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.3957s0006.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family G2-like
Protein Properties Length: 401aa    MW: 45325 Da    PI: 7.9923
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.3957s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.94.1e-32226279255
              G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Cagra.3957s0006.1.p 226 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 279
                          9****************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.15E-15223279IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-28224279IPR009057Homeodomain-like
TIGRFAMsTIGR015572.6E-23226279IPR006447Myb domain, plants
PfamPF002492.7E-7227278IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0048481Biological Processplant ovule development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MELFPAQPDL SLQISPPNSK PSSTWQRRRS TTDQEDHEEL DLGFWRRALD SRTSSLVSNS  60
SSKPTNHPFQ DLSLSNNSHH HQQQQNHHHH HQPHLLPNCN GSNILTSFQF PTQQHQQQQQ  120
HLQGFLAHDL NTHLRPIRGI PLYHNPPPPQ HQHHRPPPPC FPFDPSSLIP SSSPSLTGNN  180
NSFNTSNVSN SGLITNPNYH NHHHHQTLNR ARFMPRFPAK RSMRAPRMRW TTTLHARFVH  240
AVELLGGHER ATPKSVLELM DVKDLTLAHV KSHLQMYRTV KTTDKAAASS GQSDVYENGS  300
SGDNNSDDWM FDMNRKSRDS EEMTNPTEKS NGLWTNSSGE ARLHGKLIDN VAEIMLPSEK  360
EIDGKCSSYE RISSEEMSSS SISGTSPFKP NLEFTLGRSH *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00174DAPTransfer from AT1G32240Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0292110.0BT029211.1 Arabidopsis thaliana At1g32240 mRNA, complete cds.
GenBankAY0486890.0AY048689.1 Arabidopsis thaliana GARP-like putative transcription factor KANADI2 (KAN2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006307698.10.0hypothetical protein CARUB_v10009328mg
SwissprotQ9C6160.0KAN2_ARATH; Probable transcription factor KAN2
TrEMBLR0GXP90.0R0GXP9_9BRAS; Uncharacterized protein
STRINGAT1G32240.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53872850
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.10.0G2-like family protein