PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.3823s0004.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 343aa    MW: 39121 Da    PI: 8.7173
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.3823s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.00053292314123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C+ C+k+Fs+   L  H+  H
  Cagra.3823s0004.1.p 292 HRCGLCDKVFSTYQALGGHQTFH 314
                          79*************99999877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.516593IPR007087Zinc finger, C2H2
SMARTSM003550.626588IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806788IPR007087Zinc finger, C2H2
SuperFamilySSF576673.03E-5290316No hitNo description
PROSITE profilePS501579.078292319IPR007087Zinc finger, C2H2
PfamPF139122.2E-7292315IPR007087Zinc finger, C2H2
SMARTSM003550.31292314IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280294314IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MEDHQEFEKS IFEVRLNKLR NRTKKIGVGE SMNHYEKLYG LRENPKKTQK SLLVVHRRKN  60
KKSLIRCREC GKGFLYEKCL LTHRQVTHSE ESMRTSLLCS FSVVQRRKRS KRVSRYKTKS  120
TRFSVSSFTV FPVSVDDGEL LEVAESLILL SMSGGNFLNG LERFDKALDS SNQREYGDGF  180
LRNDQRHVAE ALDSNSEVDL SKDGDFEEDG VLSNEEKKLL GVSIESDGTW KTLSDCLADK  240
KASEDDESGQ QKQVRAGMLR EETDNGEKLV GQETAFEDSH SGKKGFEMNN EHRCGLCDKV  300
FSTYQALGGH QTFHRIRNKS KSQTKRCRKE PVEVGELRLM GQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.3823s0004.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006299242.20.0uncharacterized protein LOC17893625
TrEMBLR0I2K40.0R0I2K4_9BRAS; Uncharacterized protein
STRINGCagra.3823s0004.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM75191630
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15480.11e-20C2H2 family protein