PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.3756s0013.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family TCP
Protein Properties Length: 195aa    MW: 21932.2 Da    PI: 7.4682
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.3756s0013.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP84.52.6e-2612111689
                  TCP   6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........ssssaseceaesssssasn 84 
                          +r+    T+   R RR+Rl+++caa++F+L++eLGf++d+ t+ WLl++a+pai ++tg            +      + ++s  +s ++
  Cagra.3756s0013.1.p  12 RRTRMTPTSSKDRHRRIRLPVTCAAQVFQLTKELGFKTDGATVGWLLRNAEPAILAATGHgldatskdtpsD------F-NHSYMNSYNF 94 
                          566667799999************************************************665443222220......2.2222222222 PP

                  TCP  85 sssg............k 89 
                          ++++             
  Cagra.3756s0013.1.p  95 HGNHifynspidnsvhY 111
                          22223344444333330 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136916.402968IPR017887Transcription factor TCP subgroup
PfamPF036346.1E-221995IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MDMRNNKNNT ERRTRMTPTS SKDRHRRIRL PVTCAAQVFQ LTKELGFKTD GATVGWLLRN  60
AEPAILAATG HGLDATSKDT PSDFNHSYMN SYNFHGNHIF YNSPIDNSVH YADTSGLASH  120
PRENITGHHG TVFPGSSTSF PDLMVNHYRP GHGMLRHSVP RPQPQQQPQQ QPLSDDFDEV  180
ETVMAEQGYY QPRE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006291936.11e-109hypothetical protein CARUB_v10018123mg
SwissprotQ9M1U44e-25TCP16_ARATH; Transcription factor TCP16
TrEMBLR0H6B81e-108R0H6B8_9BRAS; Uncharacterized protein
STRINGscaffold_501359.15e-64(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16163510
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45150.14e-24TCP domain protein 16