PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.3678s0010.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family TCP
Protein Properties Length: 334aa    MW: 37195.6 Da    PI: 9.0461
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.3678s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP111.21.4e-34511652135
                  TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaa 91 
                           g+kdrhsk+ T++g+RdRR+Rls+ +a++f+dLqd+LGfd++sk++eWL+++a  +i +l+  +++                    +++
  Cagra.3678s0010.1.p  51 SGGKDRHSKVLTSKGLRDRRIRLSVATAIQFYDLQDRLGFDQPSKAVEWLINAASDSITDLPPINTNFD------------------QNQ 122
                          689************************************************************944444..................112 PP

                  TCP  92 ksaakskksqksaasalnlak.esrakarararertrekmriknk 135
                          +++    +s +s++s l+l++ e r kar+rarert+++  ++ +
  Cagra.3678s0010.1.p 123 TKS--ACSSGTSESSLLSLSRtEIRGKARERARERTAKERDKDLQ 165
                          222..3334456666799999999************998877655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.2E-2852166IPR005333Transcription factor, TCP
PROSITE profilePS5136930.78853111IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.461142160IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MELDEDVEVQ KQQQQQQQSR KLQRFSDDNT GIMMKDWSNP SSRIIRVSRA SGGKDRHSKV  60
LTSKGLRDRR IRLSVATAIQ FYDLQDRLGF DQPSKAVEWL INAASDSITD LPPINTNFDQ  120
NQTKSACSSG TSESSLLSLS RTEIRGKARE RARERTAKER DKDLQNAQSS FTQLLTGGFD  180
QQQPNNNNRN NWTGGSECFN PVQLMPNSSS SSQLPQEPTT MNQTNHPFSF VPDYNFGISS  240
SSALNGGYSS RGTLQSNSQS LFLNNNNIAQ RSSISSSSSS SSPMDSQSIS FFMATPPPLD  300
HHSHQLPATF DGRLYLYYGE GNRNSDDKGK DRR*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00169DAPTransfer from AT1G30210Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0735061e-140AC073506.11 Arabidopsis thaliana chromosome 1 BAC F12P21 genomic sequence, complete sequence.
GenBankCP0026841e-140CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankAY1138981e-140AY113898.1 Arabidopsis thaliana unknown protein (At1g30210) mRNA, complete cds.
GenBankAY0576721e-140AY057672.1 Arabidopsis thaliana At1g30210/F12P21_11 mRNA, complete cds.
GenBankAY0350081e-140AY035008.1 Arabidopsis thaliana unknown protein (At1g30210) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006303201.10.0hypothetical protein CARUB_v10011113mg
SwissprotQ9C7581e-177TCP24_ARATH; Transcription factor TCP24
TrEMBLR0I1L00.0R0I1L0_9BRAS; Uncharacterized protein
STRINGfgenesh2_kg.1__3195__AT1G30210.20.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM138401726
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30210.21e-126TCP family protein