PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.3462s0001.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 207aa    MW: 23462 Da    PI: 6.244
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.3462s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88e-054870123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         y+C+ C++ F++   L  H+++H
  Cagra.3462s0001.1.p 48 YTCSFCKREFRSAQALGGHMNVH 70
                         9********************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.35E-64574No hitNo description
PfamPF139121.3E-64871IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.244875IPR007087Zinc finger, C2H2
SMARTSM003550.00384870IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805070IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0009755Biological Processhormone-mediated signaling pathway
GO:0010093Biological Processspecification of floral organ identity
GO:0010160Biological Processformation of organ boundary
GO:0042127Biological Processregulation of cell proliferation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MERSNNIELR NSFYGGRART SPWSYGDYDT YQQDHEYLLG FSWPPRSYTC SFCKREFRSA  60
QALGGHMNVH RRDRARLRLQ QSSSSSSTPS PPYPNPNYSY SSMATSPPPP HHSPLTLFPN  120
LSPPSSPEYR ADLVRSLSPK SEHTPENACE TEKSSLLLED VEAKRLSNKD ACKFLRNDEI  180
ISLELEIGLI NESEQDLDLE LRLGFA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A3e-144370229superman protein
2l1o_A3e-144370229Transcriptional regulator SUPERMAN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator considered as cadastral protein that acts indirectly to prevent the B class homeotic proteins APETALA3 and perhaps PISTILLATA from acting in the gynoecial whorl. Principal function is to balance cell proliferation in the third and fourth whorls of developing flowers thereby maintaining the boundary between stamens and carpels. May fulfill this role by repressing genes implicated in cell division. Plays equally a role in the determinacy of the floral meristem. Is also required for normal ovule development. {ECO:0000269|PubMed:11006335, ECO:0000269|PubMed:11943180, ECO:0000269|PubMed:12324589, ECO:0000269|PubMed:1352237, ECO:0000269|PubMed:7477325}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.3462s0001.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by KRYPTONITE/SUVH4, member of the histone H3-K9 methyltransferase family that contributes with other factors to the CpNpG methylation of the SUP gene resulting in its silencing. The alternative epigenetic states of the SUPERMAN locus have been called Clark Kent alleles. Positively regulated at an early stage of development by LEAFY and by B class homeotic proteins APETALA3 and PISTILLATA. Later expression is maintained by both the B class homeotic proteins and the C class homeotic protein AGAMOUS. These two steps of regulation require the intervention of additional factors. {ECO:0000269|PubMed:11898023}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6508140.0HQ650814.1 Arabidopsis lyrata superman (SUP) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006299869.11e-128transcriptional regulator SUPERMAN
SwissprotQ388951e-114SUP_ARATH; Transcriptional regulator SUPERMAN
TrEMBLR0GAN01e-127R0GAN0_9BRAS; Uncharacterized protein
STRINGCagra.3462s0001.1.p1e-149(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81092432
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.16e-90C2H2 family protein
Publications ? help Back to Top
  1. Breuil-Broyer S, et al.
    Analysis of the Arabidopsis superman allelic series and the interactions with other genes demonstrate developmental robustness and joint specification of male-female boundary, flower meristem termination and carpel compartmentalization.
    Ann. Bot., 2016. 117(5): p. 905-23
    [PMID:27098089]
  2. Prunet N,Yang W,Das P,Meyerowitz EM,Jack TP
    SUPERMAN prevents class B gene expression and promotes stem cell termination in the fourth whorl of Arabidopsis thaliana flowers.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(27): p. 7166-7171
    [PMID:28634297]
  3. Uemura A, et al.
    Regulation of floral meristem activity through the interaction of AGAMOUS, SUPERMAN, and CLAVATA3 in Arabidopsis.
    Plant Reprod, 2018. 31(1): p. 89-105
    [PMID:29218596]
  4. Xu Y, et al.
    SUPERMAN regulates floral whorl boundaries through control of auxin biosynthesis.
    EMBO J., 2019.
    [PMID:29764982]