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Plant Transcription
Factor Database
v4.0
Previous version: v1.0,
v2.0,
v3.0
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Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.3364s0020.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | bZIP | ||||||||
Protein Properties | Length: 457aa MW: 51181.4 Da PI: 6.0297 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 31.3 | 4.5e-10 | 170 | 213 | 5 | 45 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLee...kvkeLeaeNkaL 45 + rr+++NReAAr+sR+RKka++++Le+ + ++Le+e k+ Cagra.3364s0020.1.p 170 RTLRRLAQNREAARKSRLRKKAYVQQLENsriRLAQLEEELKRV 213 5679***********************97444667777666554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 8.0E-7 | 166 | 237 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.347 | 168 | 212 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 3.2E-7 | 169 | 212 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 9.64E-7 | 170 | 212 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 1.0E-7 | 172 | 213 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 173 | 188 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 8.0E-28 | 255 | 328 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 457 aa Download sequence Send to blast |
MQSSFKTVPF NPDFYSQSSY FFRGDSCLED FHQPVNGFHH DEPIDLSPNV TIASANLHYT 60 TFDTVMECGG LRERLEREDE CLDTEQLVYQ KGTRLVGGVG VEGGGGGGEV NISLENWCDS 120 VSAMADNSQH TDTSTDIDTD DKTQLNGVRQ GMVLATNCSD QSKVKSSEQR TLRRLAQNRE 180 AARKSRLRKK AYVQQLENSR IRLAQLEEEL KRVRQQGSLA ESGVTADHTH LAAGNGAFSF 240 ELEYTRWKEE HQRLINDLRS GVNSQLGDNE LRVLVDAVMS HYDEIFRLKG IGTKVDVFHM 300 LSGMWKTPAE RFFMWLGGFR SSELLKILGN HVDPLTDQQL IGICNLQQSS QQAEDALSQG 360 MEALQQSLLE TLSSASMGPN SSANVADYMG HMAMAMGKLG TLENFLRQAD LLRQQTLQQL 420 HRILTTRQAA RAFLVIHDYI SRLRALSSLW LARPRD* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT008586 | 0.0 | BT008586.1 Arabidopsis thaliana clone U50929 putative bZIP transcription factor, PERIANTHIA (At1g68640) mRNA, complete cds. | |||
GenBank | AK118286 | 0.0 | AK118286.1 Arabidopsis thaliana At1g68640 mRNA for putative bZip transcription factor PERIANTHIA (PAN) / AtbZip46, complete cds, clone: RAFL19-57-M21. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006300957.1 | 0.0 | hypothetical protein CARUB_v10021345mg | ||||
Swissprot | Q9SX27 | 0.0 | PAN_ARATH; Transcription factor PERIANTHIA | ||||
TrEMBL | R0I710 | 0.0 | R0I710_9BRAS; Uncharacterized protein | ||||
STRING | fgenesh2_kg.2__1120__AT1G68640.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM667 | 28 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68640.1 | 0.0 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Cagra.3364s0020.1.p |