PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.3364s0006.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family LBD
Protein Properties Length: 239aa    MW: 25746.9 Da    PI: 7.4438
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.3364s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26093.32.7e-294104196
               DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                          +C++C+vlr++C++dC+++p++     +++q++++ +++k++G++ +l+l+++ p++ r+++++sl+yeA+ r+ +Pv G+vg+++++++
  Cagra.3364s0006.1.p   4 SCNGCRVLRKGCNQDCTIRPCLqwiksADSQANATLFLAKFYGRAGLLNLIESGPDHLRPAIFRSLLYEACGRIVNPVDGSVGLMWTGNW 93 
                          6*********************9999767889********************************************************** PP

               DUF260  86 qleqlkaelal 96 
                            +q++++++l
  Cagra.3364s0006.1.p  94 AQCQAAVDAVL 104
                          *****999876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.8413109IPR004883Lateral organ boundaries, LOB
PfamPF031953.6E-234101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MRISCNGCRV LRKGCNQDCT IRPCLQWIKS ADSQANATLF LAKFYGRAGL LNLIESGPDH  60
LRPAIFRSLL YEACGRIVNP VDGSVGLMWT GNWAQCQAAV DAVLNGLPIT HTPLPSASAS  120
NQIIPPHRTY DIRHVAKDPA PGGDSSEGLA TRANANKSKT QTGRFKRLAE SVNQLGECSH  180
DTWQFPSSGA THGYGHFTLE TVEVRGEAAP FNQSSSNVGF DDQVQVDINE VGLELRLG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738690.0AB473869.1 Arabidopsis thaliana ASL36 mRNA for ASYMMETRIC LEAVES2-like 36 protein, complete cds.
GenBankAF4478960.0AF447896.1 Arabidopsis thaliana LOB DOMAIN 42 (LBD42) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006301915.11e-179hypothetical protein CARUB_v10022391mg
SwissprotQ9CA301e-161LBD42_ARATH; LOB domain-containing protein 42
TrEMBLR0IDP81e-179R0IDP8_9BRAS; Uncharacterized protein
STRINGAT1G68510.11e-158(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84632639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68510.11e-162LOB domain-containing protein 42