PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.2968s0004.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 276aa    MW: 31890.6 Da    PI: 8.7856
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.2968s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.79.8e-06221243123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          y+Cp+C+ +F ++  +  H+ +H
  Cagra.2968s0004.1.p 221 YTCPKCNNVFDTSQKFAAHMLSH 243
                          9********************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.98E-5209245No hitNo description
Gene3DG3DSA:3.30.160.604.2E-4210244IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0049221243IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.411221248IPR007087Zinc finger, C2H2
PROSITE patternPS000280223243IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MFSTPNMFNI YSDDSINHHE MLHNSQMVQS TFDRMNHEIL FASPLSFSYP QNSHASSPPF  60
HYLMRGNFDS VSGAENSHSS LSLHLTQVPF NQTITNRYTT IIPTNTQFQY DTECAKRSMD  120
SKINRNYVSH PPNFLDSQRE VLSPTPLSVV YPHQDFDDLR LSDMVSMPSK GNHIPQDSQF  180
MKKILKPKIT YYVDSDEDEK SDDDQYDGRT HSISSKKYGP YTCPKCNNVF DTSQKFAAHM  240
LSHYKSENIK EKARRLRARN KNRYCKLTTS LKRSK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.2968s0004.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006295940.21e-142uncharacterized protein LOC17888798
TrEMBLR0HXM80.0R0HXM8_9BRAS; Uncharacterized protein
STRINGCagra.2968s0004.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19241958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42640.11e-68C2H2 family protein