PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.2935s0020.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family TCP
Protein Properties Length: 285aa    MW: 31396.2 Da    PI: 7.0938
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.2935s0020.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP125.27e-39511872135
                  TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg..k 89 
                           g+kdrhsk+ T++g+RdRRvRls+++a +f+dLqd+LG+d++sk++eWL+++a+ +i el+++ ++++  +++++s++++ + s +  +
  Cagra.2935s0020.2.p  51 SGGKDRHSKVLTSKGPRDRRVRLSVSTALQFYDLQDRLGYDQPSKAVEWLIKAAEDSISELPSL-NNANFPTDDDDSQNQTLSRSVAaaN 139
                          689*************************************************************.4444344444444444434433665 PP

                  TCP  90 aaksaa.kskksqksaasalnlak.esrakarararertrekmriknk 135
                          + +++a +s++++++++s l+l++ e r kar+rarert+++ + +++
  Cagra.2935s0020.2.p 140 SLSKSAcSSNSDTSKNSSGLSLSRsELRDKARERARERTAKETKERDH 187
                          5566665778888888889999999***************99988755 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.3E-3852184IPR005333Transcription factor, TCP
PROSITE profilePS5136931.22153111IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.205164185IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MFPKLGDDDE MIGDLMKNNN NGDVVDNNNN GNRLSRWHHN SSRIIRVSRA SGGKDRHSKV  60
LTSKGPRDRR VRLSVSTALQ FYDLQDRLGY DQPSKAVEWL IKAAEDSISE LPSLNNANFP  120
TDDDDSQNQT LSRSVAAANS LSKSACSSNS DTSKNSSGLS LSRSELRDKA RERARERTAK  180
ETKERDHQSH TSFTDLLNSG SDPVNSNRQW MAQAPAPAPS SSPMEYFSSG LILGSGQQTH  240
FPISTNSHPF SSISDHHHHH PHQEFSFVPE HLISPAGSNA EHSI*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00006PBMTransfer from 493022Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBankAL1615480.0AL161548.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 48.
GenBankAL0217100.0AL021710.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F28J12 (ESSAII project).
GenBankAF3672920.0AF367292.1 Arabidopsis thaliana AT4g18390/F28J12_50 mRNA, complete cds.
GenBankAF3672700.0AF367270.1 Arabidopsis thaliana AT4g18390/F28J12_50 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006283886.11e-172hypothetical protein CARUB_v10005003mg
SwissprotQ93V431e-152TCP2_ARATH; Transcription factor TCP2
TrEMBLR0GIV61e-172R0GIV6_9BRAS; Uncharacterized protein
STRINGfgenesh2_kg.7__2455__AT4G18390.11e-164(Arabidopsis lyrata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.22e-98TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2