PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.2848s0054.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family B3
Protein Properties Length: 308aa    MW: 35360 Da    PI: 4.9085
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.2848s0054.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B363.24.1e-2013103198
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrse 89 
                          f+k++  +++  s+rlv+p+ + + + ++   ++t +l+ ++g+ W+vk   +k+++  + +++GW++Fvk+ngL ++Df++F++dg+++
  Cagra.2848s0054.1.p  13 FLKIF--NSHEHSKRLVIPRGYNKYYPNP--LPQTAVLKRPEGNFWTVKW--KKSQEDtISFQEGWEKFVKDNGLIDRDFLLFTYDGSRS 96 
                          66777..56666678*******9666644..889****************..777766799************************99888 PP

                          E..EEEEE- CS
                   B3  90 felvvkvfr 98 
                          f  +v+++r
  Cagra.2848s0054.1.p  97 F--WVRIHR 103
                          8..999987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.61E-229103IPR015300DNA-binding pseudobarrel domain
CDDcd100171.32E-1811103No hitNo description
PROSITE profilePS5086313.73311105IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.7E-2111103IPR015300DNA-binding pseudobarrel domain
SMARTSM010195.3E-2013105IPR003340B3 DNA binding domain
PfamPF023621.6E-1813103IPR003340B3 DNA binding domain
SuperFamilySSF1019368.63E-5210299IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.32215303IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MVLENGFPPL PDFLKIFNSH EHSKRLVIPR GYNKYYPNPL PQTAVLKRPE GNFWTVKWKK  60
SQEDTISFQE GWEKFVKDNG LIDRDFLLFT YDGSRSFWVR IHRDGLPLEP STPIKIQEIS  120
DDEIDTAGGG PDRHMEEGDS HEDMIVSLSL GTSDELSDDD DDDDYDDDED TAICEFNKAS  180
GSCSKKGRVM KTRRDAVIAE SVKVETLLED PQNPFFISTS SCSRRVLVIS MQVIKDFNLK  240
FEPTIKLIDG FGELKRKVGK WKDRVVVYKW DEMYNRNKSM PGDIIICEIL RDEGDVVHTV  300
KVHFVKK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A2e-16131021199At1g16640
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.2848s0054.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023633151.10.0B3 domain-containing protein At5g57720 isoform X2
SwissprotQ9FHH11e-150Y5772_ARATH; B3 domain-containing protein At5g57720
TrEMBLR0EWE20.0R0EWE2_9BRAS; Uncharacterized protein
STRINGCagra.2848s0054.1.p0.0(Capsella grandiflora)
STRINGXP_006280599.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137971723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57720.11e-144B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]