PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.2826s0007.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 352aa    MW: 38451.5 Da    PI: 5.4795
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.2826s0007.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.0003227250123
                          EEETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                          ykC+ Cgk F++   L  H  t H
  Cagra.2826s0007.1.p 227 YKCSVCGKEFTSFQALGGHKATsH 250
                          9***********999988888777 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.7E-11226251IPR007087Zinc finger, C2H2
SuperFamilySSF576672.6E-7226297No hitNo description
PROSITE profilePS5015710.346227254IPR007087Zinc finger, C2H2
SMARTSM003550.01227250IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280229250IPR007087Zinc finger, C2H2
PfamPF139121.6E-10275297IPR007087Zinc finger, C2H2
SMARTSM003550.25275297IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.723275302IPR007087Zinc finger, C2H2
PROSITE patternPS000280277297IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MPVSVLKKQL EFAMQDYEDG LQVDDNVVIQ NLLEKIERNF STTCDQDTYS ERFIKALEQI  60
RREEDDAALV ETGSESSQHS QGVDEDSFSQ HRFLEGLGQK EEEGFGYGAV STKTGLESSV  120
QSQRQRSGDD GDCFSEQSSS FVETNGRGDK KLGGYAENDA FIELLLENIV QSRLQQRLSS  180
SSDDVKAPSS SSSSSLSEVE IATRSHKKEP QKQPKPKPQM LPKSDAYKCS VCGKEFTSFQ  240
ALGGHKATSH RVKPLLNDSG EKTGPKTLAP SGKIHQCSIC HKLFPTGQSL GGHKRLHNQG  300
DKLSPSGNAD GATNVSDPKQ SLEGLVDVNE VPSRGDIVEV KSAKIKFFNF I*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.2826s0007.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023644535.10.0uncharacterized protein LOC17900837
TrEMBLR0I2R11e-170R0I2R1_9BRAS; Uncharacterized protein
STRINGCagra.2826s0007.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM149691217
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19580.25e-24zinc-finger protein 2