PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.2527s0006.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

TCP

Protein Properties

Length: 363aa MW: 40284 Da PI: 7.1417

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.2527s0006.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	91.2	2.2e-28	26	105	1	83
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssssaseceaess 78 a+g+kdrhsk+ T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ai++l + Cagra.2527s0006.1.p 26 ATGRKDRHSKVFTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKTAIDKLEIAettttttrqesvN------------ 103 589*********************************************************998773333222222221............ PP TCP 79 sssas 83 ++ Cagra.2527s0006.1.p 104 ---TK 105 ...11 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.8E-32	27	120	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	32.297	29	87	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009965	Biological Process	leaf morphogenesis
GO:0030154	Biological Process	cell differentiation
GO:0045962	Biological Process	positive regulation of development, heterochronic

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence Send to blast
MGLKGYSVGE GGGEIVEVQG GHIIRATGRK DRHSKVFTSK GPRDRRVRLS AHTAIQFYDV 60 QDRLGYDRPS KAVDWLIKKA KTAIDKLEIA ETTTTTTRQE SVNTKPGSPN LVFQRDNNDQ 120 TQFVSANLDS EDAMKTFFPA TTTSSGGGGG GGTNMNFQHY PHHDDDNIVS RTTTTTPQNL 180 SQDLGLSLHP FQGNNNAVVV PETNSFTTTH FDTFGRISGW NHHDLTMTSS SSSEQHEEER 240 SNGGFMVNHH HHHHQHQPSM MTLLNSQQQQ VFLGGQQQQQ QRGTLQSSLF PHSFRSWDHQ 300 TTSDQHHHQH QNQASPVMFA SQFGSHGMMM MQGLSFPNTT RLLHGEEATQ PNSSSPPQNS 360 HL*

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence Send to blast

MGLKGYSVGE GGGEIVEVQG GHIIRATGRK DRHSKVFTSK GPRDRRVRLS AHTAIQFYDV  60
QDRLGYDRPS KAVDWLIKKA KTAIDKLEIA ETTTTTTRQE SVNTKPGSPN LVFQRDNNDQ  120
TQFVSANLDS EDAMKTFFPA TTTSSGGGGG GGTNMNFQHY PHHDDDNIVS RTTTTTPQNL  180
SQDLGLSLHP FQGNNNAVVV PETNSFTTTH FDTFGRISGW NHHDLTMTSS SSSEQHEEER  240
SNGGFMVNHH HHHHQHQPSM MTLLNSQQQQ VFLGGQQQQQ QRGTLQSSLF PHSFRSWDHQ  300
TTSDQHHHQH QNQASPVMFA SQFGSHGMMM MQGLSFPNTT RLLHGEEATQ PNSSSPPQNS  360
HL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	5e-22	34	87	1	54	Putative transcription factor PCF6
5zkt_B	5e-22	34	87	1	54	Putative transcription factor PCF6
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269\|PubMed:17307931, ECO:0000269\|PubMed:25378179}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.2527s0006.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC005311	0.0	AC005311.3 Arabidopsis thaliana chromosome 2 clone T16B12 map m283, complete sequence.
GenBank	AY059945	0.0	AY059945.1 Arabidopsis thaliana Unknown protein (At2g31070; T16B12.12) mRNA, complete cds.
GenBank	BT001194	0.0	BT001194.1 Arabidopsis thaliana Unknown protein (At2g31070) mRNA, complete cds.
GenBank	CP002685	0.0	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006293485.1	0.0	transcription factor TCP10
Swissprot	O82277	1e-179	TCP10_ARATH; Transcription factor TCP10
TrEMBL	R0HQX6	0.0	R0HQX6_9BRAS; Uncharacterized protein
STRING	Cagra.2527s0006.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14158	19	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31070.1	1e-148	TCP domain protein 10

Link Out ? help Back to Top
Phytozome	Cagra.2527s0006.1.p

Publications ? help Back to Top
Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549] Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development. Plant Physiol., 2018. 176(2): p. 1694-1708 [PMID:29133375]