PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.24093s0001.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family TCP
Protein Properties Length: 194aa    MW: 21608.9 Da    PI: 6.426
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.24093s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP77.82.9e-2416801366
                   TCP 13 TkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........s 66
                          T+   R RR+Rl+++caa++F+L++eL f++d++t+ WLl++a+pai ++tg             
  Cagra.24093s0001.1.p 16 TSSKDRHRRIRLPVTCAAQVFQLTQELCFKTDGETVGWLLRNAEPAILAATGHgldttsdetsnH 80
                          78889************************************************665443322220 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136915.372165IPR017887Transcription factor TCP subgroup
PfamPF036341.5E-2118111IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MDLRNNTECK ARRTPTSSKD RHRRIRLPVT CAAQVFQLTQ ELCFKTDGET VGWLLRNAEP  60
AILAATGHGL DTTSDETSNH FIHSYMNIHN CSNISFGNSY NYSCTIDNSV HYADTSGLVS  120
HRRENITGHH GMVFPGATMP EYGPSTGFSE NLMVNHNRPG MVRPSAPQPQ PQQQPDDFDE  180
VETVMAEPAY YHP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002875712.13e-79hypothetical protein ARALYDRAFT_905655
SwissprotQ9M1U42e-32TCP16_ARATH; Transcription factor TCP16
TrEMBLD7LNL13e-79D7LNL1_ARALL; Putative uncharacterized protein
STRINGscaffold_501359.19e-79(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16163510
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45150.15e-34TCP domain protein 16