PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.2350s0072.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 284aa    MW: 31337.2 Da    PI: 9.0516
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.2350s0072.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.0017163185123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C+ C+k+F ++  L  H  +H
  Cagra.2350s0072.1.p 163 FECGVCKKVFGSHQALGGHRASH 185
                          89************999999888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.55677104IPR007087Zinc finger, C2H2
SMARTSM003550.17799IPR015880Zinc finger, C2H2-like
PfamPF139121.3E-877101IPR007087Zinc finger, C2H2
SuperFamilySSF576673.76E-87899No hitNo description
PROSITE patternPS0002807999IPR007087Zinc finger, C2H2
SuperFamilySSF576673.76E-8158185No hitNo description
PfamPF139122.5E-9162186IPR007087Zinc finger, C2H2
SMARTSM003550.22163185IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.764163190IPR007087Zinc finger, C2H2
PROSITE patternPS000280165185IPR007087Zinc finger, C2H2
PfamPF139121.3E-12220245IPR007087Zinc finger, C2H2
SuperFamilySSF576671.3E-5220246No hitNo description
SMARTSM003550.13221243IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.432221248IPR007087Zinc finger, C2H2
PROSITE patternPS000280223243IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MTNNNSFYDP NFHIPLHPSN ASNPNPNLRF ALSPSYDHSP KKKRTKTVAS SSSFSPKSAL  60
KPRYTKKPDP NAPKITRPCT ECGRQFWSLK ALFGHMRCHP ERQWRGINPP PNYRSPTTAA  120
SSKQLSQRSP DWVSSMSEED HEVASCLLLL SSGTPSSSSS ERFECGVCKK VFGSHQALGG  180
HRASHKNVKG CFAITNVTDD PMTSTTSSDH QGKIVTFSGH HKCNICYRVF SSGQALGGHM  240
RCHWEREDEP MNGGALDLNV PATIHDLSIS DTLECSLDLR LRL*
Functional Description ? help Back to Top
Source Description
UniProtMediates the regulation of male germ cell division by DUO1. {ECO:0000269|PubMed:24876252}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.2350s0072.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Activated by the transcription factor DUO1. {ECO:0000269|PubMed:21285328}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937190.0AB493719.1 Arabidopsis thaliana At4g35280 mRNA for hypothetical protein, partial cds, clone: RAAt4g35280.
GenBankAL0226040.0AL022604.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F23E12 (ESSA project).
GenBankAL1615870.0AL161587.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 83.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBankDQ4468960.0DQ446896.1 Arabidopsis thaliana clone pENTR221-At4g35280 zinc finger family protein (At4g35280) mRNA, complete cds.
GenBankDQ6532460.0DQ653246.1 Arabidopsis thaliana clone 0000012370_0000008938 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023634716.10.0LOW QUALITY PROTEIN: zinc finger protein ZAT3
SwissprotO654991e-168ZAT3_ARATH; Zinc finger protein ZAT3
TrEMBLR0GXE11e-179R0GXE1_9BRAS; Uncharacterized protein
STRINGCagra.2350s0072.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46191836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.11e-154C2H2-like zinc finger protein