PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.21772s0001.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family B3
Protein Properties Length: 304aa    MW: 35061 Da    PI: 10.3196
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.21772s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B368.68.6e-2219113199
                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrs 88 
                           ffk+  + dv ++++  lp +f+++++  ke s ++++++++grsWev++  +k+++  ++ ++GW +Fvk+n L   +f++F+++g++
  Cagra.21772s0001.1.p  19 FFKAVQSIDVASENMRALPHDFVRSFSD-KELSCKMKIRTQWGRSWEVEI--SKNPRFyFMEKSGWDKFVKDNALGHSEFLTFTHKGNM 104
                           89999******************99965.57899****************..******555569************************* PP

                           EE..EEEEE-S CS
                    B3  89 efelvvkvfrk 99 
                           +f  +v +f++
  Cagra.21772s0001.1.p 105 CF--TVNIFKQ 113
                           **..9999976 PP

2B336.86.8e-122283001796
                           E--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                    B3  17 vlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                           ++p +fa++h+  +ee+++ ++ +++g +sW+v + ++ +s    +++GW++ vk+  L+ gD++ F+l++ +e  l++ v
  Cagra.21772s0001.1.p 228 RIPVSFAKDHM--PEEKTMFKIHHQDGkKSWNVIYLMKFRS----FSGGWRSVVKEYPLDPGDTCKFTLIEPNE--LLLVV 300
                           79********7..4466789999999989******555555....89*********************997433..34444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.6E-2014115IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.08E-2015119IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.09919114IPR003340B3 DNA binding domain
CDDcd100175.47E-1919112No hitNo description
SMARTSM010193.0E-2319114IPR003340B3 DNA binding domain
PfamPF023621.3E-1919113IPR003340B3 DNA binding domain
SuperFamilySSF1019365.69E-15208302IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.2E-13210302IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.264212303IPR003340B3 DNA binding domain
SMARTSM010191.3E-15215303IPR003340B3 DNA binding domain
CDDcd100174.93E-10228301No hitNo description
PfamPF023625.2E-9228297IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MARNGDYLWC LQERKHEGFF KAVQSIDVAS ENMRALPHDF VRSFSDKELS CKMKIRTQWG  60
RSWEVEISKN PRFYFMEKSG WDKFVKDNAL GHSEFLTFTH KGNMCFTVNI FKQNGKEMIQ  120
PSQSRAFLAS SSRVKTEQRR GSVYNDVKKE EVLSPELSNR SPTTVVESNG GESYKRKLSF  180
GKKKAEETQN SKRTEKVARA RRDSAGASSS SVSEFTILFK KANQIFQRIP VSFAKDHMPE  240
EKTMFKIHHQ DGKKSWNVIY LMKFRSFSGG WRSVVKEYPL DPGDTCKFTL IEPNELLLVV  300
FKP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006299339.10.0hypothetical protein CARUB_v10015496mg
SwissprotQ5BPT71e-134Y2621_ARATH; B3 domain-containing protein At2g16210
TrEMBLR0G9A50.0R0G9A5_9BRAS; Uncharacterized protein
STRINGfgenesh2_kg.3__3493__AT2G16210.11e-152(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16210.11e-130B3 family protein