PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.2117s0054.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family LBD
Protein Properties Length: 187aa    MW: 20910.3 Da    PI: 5.9972
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.2117s0054.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260116.81.3e-3681081100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                          +C aCk+lrrkC+ dCv++pyf  eq +++fa+vhk+FGasnv+k l +lp ++r+ a+ ++ yeA  r+rdPvyG+v++i++l+qq+ +
  Cagra.2117s0054.1.p   8 SCGACKFLRRKCTCDCVFSPYFSYEQaSSHFAAVHKVFGASNVSKHLLQLPLHQRSVAAITISYEALSRMRDPVYGCVAHIFALHQQVVS 97 
                          6***********************9978************************************************************** PP

               DUF260  90 lkaelallkee 100
                          l++e++ l+++
  Cagra.2117s0054.1.p  98 LQEEIEFLGSQ 108
                          *****998876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.1017109IPR004883Lateral organ boundaries, LOB
PfamPF031952.5E-348104IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MAGHGSSSCG ACKFLRRKCT CDCVFSPYFS YEQASSHFAA VHKVFGASNV SKHLLQLPLH  60
QRSVAAITIS YEALSRMRDP VYGCVAHIFA LHQQVVSLQE EIEFLGSQMT NLSYSNQNGS  120
QFNNVPEFVN QVTTVDTTNF VDEISVWNNH DDGRNCVDGF FANSEEMVVN HTWLQNTDYY  180
YCAPQN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006289422.11e-132hypothetical protein CARUB_v10002921mg
SwissprotQ9LHS81e-110LBD33_ARATH; LOB domain-containing protein 33
TrEMBLR0HBB91e-132R0HBB9_9BRAS; Uncharacterized protein
STRINGAl_scaffold_0006_5271e-115(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.11e-111LOB domain-containing protein 33