PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.2098s0013.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family LBD
Protein Properties Length: 280aa    MW: 29874.2 Da    PI: 8.262
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.2098s0013.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260127.27.5e-40541551101
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                          +C aCk+lrrkC+++C++ap+f ++q +++fa+vhk+FGasnv+kll+++p ++r+da+ ++ yeA+ar++dPvyG+v++il+lqqq+++
  Cagra.2098s0013.1.p  54 PCGACKFLRRKCVSGCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLHHIPVNRRHDAVVTISYEAQARLSDPVYGCVSTILALQQQVAS 143
                          7***********************9989************************************************************** PP

               DUF260  90 lkaelallkeel 101
                          l+ael++++++l
  Cagra.2098s0013.1.p 144 LQAELSVVQSQL 155
                          ********9985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.21653155IPR004883Lateral organ boundaries, LOB
PfamPF031951.7E-3954152IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:1900150Biological Processregulation of defense response to fungus
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MADQQQRSHN TSDSRRKSLA GKRTSQQTPT TSSLSSGGGA MAATTTTGTG TASPCGACKF  60
LRRKCVSGCI FAPHFGSDQG AARFAAVHKV FGASNVSKLL HHIPVNRRHD AVVTISYEAQ  120
ARLSDPVYGC VSTILALQQQ VASLQAELSV VQSQLINSRV AMANVMQQQT HHQQQQQQQL  180
VVMQQPEYSN NSSASTTLAG AAMNRFTVAA EAAAVSYDVM APTNLEHSLQ PPMLRHQQSR  240
GDHQHEDEEE SGGADFSVAV GSTTVASEVI FPAEGFHRR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0085890.0BT008589.1 Arabidopsis thaliana clone U50874 unknown protein (At3g03760) mRNA, complete cds.
GenBankAB4738540.0AB473854.1 Arabidopsis thaliana ASL21 mRNA for ASYMMETRIC LEAVES2-like 21 protein, complete cds.
GenBankAK1182910.0AK118291.1 Arabidopsis thaliana At3g03760 mRNA for unknown protein, complete cds, clone: RAFL19-58-F13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006299263.11e-173hypothetical protein CARUB_v10015417mg
SwissprotQ9SRV31e-156LBD20_ARATH; LOB domain-containing protein 20
TrEMBLR0G9E81e-173R0G9E8_9BRAS; Uncharacterized protein
STRINGfgenesh1_pg.C_scaffold_30003011e-156(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.11e-124LOB domain-containing protein 20