PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1659s0005.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family TCP
Protein Properties Length: 350aa    MW: 38920 Da    PI: 10.0795
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1659s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1363.3e-421443222134
                  TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.. 88 
                          + k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+p+++++tgt++++a+++  + s +ss+s+ s +  
  Cagra.1659s0005.1.p 144 PLKRASTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTGTIPANFTsLNISLRSSGSSMSLPsh 233
                          57999***********************************************************66666555544444444442222233 PP

                  TCP  89 .........................................kaaksaa.kskksqksaasalnlakesrakararare.rtrekmrikn 134
                                                                   +a +s+  ++ ++ ++++s+ln+++ ++++ ++++ e ++++k r+++
  Cagra.1659s0005.1.p 234 frsaastfspnnifspamlqqqqqqrggggggfhhhphlqgRATTSSLfPGIDNFTPTTSFLNFHNPTKQEGDQDSDElSSEKKRRLQT 322
                          3444444455445555555555555556699999999999988888888999****************999999999966666666554 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036349.3E-41149325IPR005333Transcription factor, TCP
PROSITE profilePS5136927.505150204IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008283Biological Processcell proliferation
GO:0009735Biological Processresponse to cytokinin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0010029Biological Processregulation of seed germination
GO:0010229Biological Processinflorescence development
GO:0031347Biological Processregulation of defense response
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MKNHIYIHKN QNPNFFINIY KNHYSSPHLY MQKPTSSILN VIMDGGDNVG GGGGDDHHRH  60
LHHHHRPTFP FQLLGKRDPD DNHQQQPSPS SSSTLFSLHQ HQQLSQSQQQ QPQPQKPQPQ  120
TTQKELLQQP QEESTAVVAA KKPPLKRAST KDRHTKVDGR GRRIRMPALC AARVFQLTRE  180
LGHKSDGETI EWLLQQAEPS VIAATGTGTI PANFTSLNIS LRSSGSSMSL PSHFRSAAST  240
FSPNNIFSPA MLQQQQQQRG GGGGGFHHHP HLQGRATTSS LFPGIDNFTP TTSFLNFHNP  300
TKQEGDQDSD ELSSEKKRRL QTTSDLQLQH QHDQIGSYTL QSSNSGSTAT
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00396DAPTransfer from AT3G47620Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
GenBankAL1329550.0AL132955.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F1P2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006290929.11e-148hypothetical protein CARUB_v10017043mg
SwissprotQ93Z001e-133TCP14_ARATH; Transcription factor TCP14
TrEMBLR0FMX11e-148R0FMX1_9BRAS; Uncharacterized protein
STRINGfgenesh2_kg.5__1118__AT3G47620.11e-132(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39152757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47620.11e-115TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14