PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1554s0002.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family GeBP
Protein Properties Length: 430aa    MW: 46910.4 Da    PI: 4.7398
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1554s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF5731192.6e-37122220298
               DUF573   2 lfqrlwseeDeivlLqGlidf.kaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkif 89 
                          lfqrlw++eDei lL+G++d+ ++++g s++  d+  fye++k++++++++k+qlveK+rrLKkK+++ ++k++sgke+ f+++hdq +f
  Cagra.1554s0002.1.p 122 LFQRLWTDEDEIELLRGFLDYiTNHRGNSSHPpDTAPFYEQIKSKLQLEFNKNQLVEKLRRLKKKYRNVMSKISSGKEVFFKSPHDQATF 211
                          79*******************9999**999999********************************************************* PP

               DUF573  90 elskkiWgs 98 
                          ++s+kiW++
  Cagra.1554s0002.1.p 212 DISRKIWNQ 220
                          *******85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045044.4E-34123219IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MASDQRDTVF SVESPDLDDG GGGGGGGGGE TESDEDVVIP EQNDVEEDDP EYEDLNSPSM  60
VSAISTAPSV IKSSSSTGTV TVALPAGSAV PVASIPSDSD QKWHRMTEIV HQRPPIDDSR  120
RLFQRLWTDE DEIELLRGFL DYITNHRGNS SHPPDTAPFY EQIKSKLQLE FNKNQLVEKL  180
RRLKKKYRNV MSKISSGKEV FFKSPHDQAT FDISRKIWNQ TGKIIGFEDN NVMDFEETNH  240
VNNHNTNNGG GSGFNISIAN ANVDVDLENG LEKKVTMSRK RSRSRIGKID EDKPILAPCD  300
GGLPNAVNLN ENVAAVGDFI DGRNLGGLIE ETVKNCVSPM IKEMMNGTTG MMMAAMGGFP  360
GGGGAHSLGV LSPMLIPSMN QGFGGKGAGD ERWRRQQILE LEVYSRRLEL VQEQIRATVN  420
ELKTMPNGG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1279284KRSRSR
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1554s0002.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023636557.10.0probable transcription factor At5g28040
SwissprotF4K5T40.0STKLU_ARATH; Probable transcription factor At5g28040
TrEMBLR0H7660.0R0H766_9BRAS; Uncharacterized protein
STRINGCagra.1554s0002.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30982764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.10.0DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. GarcĂ­a-Cano E,Hak H,Magori S,Lazarowitz SG,Citovsky V
    The Agrobacterium F-Box Protein Effector VirF Destabilizes the Arabidopsis GLABROUS1 Enhancer/Binding Protein-Like Transcription Factor VFP4, a Transcriptional Activator of Defense Response Genes.
    Mol. Plant Microbe Interact., 2018. 31(5): p. 576-586
    [PMID:29264953]