PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1508s0074.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NF-X1
Protein Properties Length: 1100aa    MW: 120680 Da    PI: 8.0505
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1508s0074.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X1223.4e-07321339119
             zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                          CG+H+C++ CH GpC++C+
  Cagra.1508s0074.1.p 321 CGRHRCERACHVGPCDSCQ 339
                          ******************6 PP

2zf-NF-X117.49.6e-06541559119
             zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                          CG+H+C+ lCH+G CppC 
  Cagra.1508s0074.1.p 541 CGQHSCETLCHTGHCPPCL 559
                          ******************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578501.41E-6144213No hitNo description
PROSITE profilePS500168.849151212IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590154209IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500899.716154210IPR001841Zinc finger, RING-type
CDDcd060081.69E-5243304No hitNo description
SMARTSM004380.023266284IPR000967Zinc finger, NF-X1-type
PfamPF014228.2268283IPR000967Zinc finger, NF-X1-type
CDDcd060086.96E-12311359No hitNo description
SMARTSM004383.3E-4321340IPR000967Zinc finger, NF-X1-type
PfamPF014222.3E-5321338IPR000967Zinc finger, NF-X1-type
CDDcd060087.02E-7375420No hitNo description
SMARTSM004380.002385404IPR000967Zinc finger, NF-X1-type
PfamPF014222.8E-4385402IPR000967Zinc finger, NF-X1-type
CDDcd060084.81E-13433481No hitNo description
SMARTSM004380.0049443462IPR000967Zinc finger, NF-X1-type
PfamPF014220.0031443460IPR000967Zinc finger, NF-X1-type
SMARTSM00438230501537IPR000967Zinc finger, NF-X1-type
PfamPF0142218501512IPR000967Zinc finger, NF-X1-type
CDDcd060087.69E-8534583No hitNo description
SMARTSM004380.0038541560IPR000967Zinc finger, NF-X1-type
PfamPF014226.1E-4541558IPR000967Zinc finger, NF-X1-type
CDDcd060083.97E-6588635No hitNo description
SMARTSM004380.13598616IPR000967Zinc finger, NF-X1-type
PfamPF0142223598615IPR000967Zinc finger, NF-X1-type
SMARTSM004380.018651682IPR000967Zinc finger, NF-X1-type
PfamPF014220.0099651666IPR000967Zinc finger, NF-X1-type
CDDcd060089.70E-5680729No hitNo description
PfamPF0142213684710IPR000967Zinc finger, NF-X1-type
SMARTSM004380.039691712IPR000967Zinc finger, NF-X1-type
Gene3DG3DSA:3.30.70.3305.7E-4938982IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1100 aa     Download sequence    Send to blast
MSSQVRRDRR ERPRFTSRTT QQTWVPRGTS STSVVVNETP FPLDANTNSG SLDDAGARTG  60
PVYQQRQHYE SAPLLNNPGP PSYSRQRRNN ASRPVLDNRQ RGGFRGRLPR TGNEGTGLDK  120
ERNEHNENTV MTDPNLPQLL QEIQDKLTKG SIECMICYDM VRRSANIWSC SSCYSIFHLN  180
CIKKWARAPT SVDLLADKNQ GSNWRCPGCQ FVQLTSSKEI QYRCFCGKRK DPPSDPYLTP  240
HSCGDICGKP LEKEFATAAT VKENTCPHVC VLQCHPGPCP PCKAFAPPRN CPCGKKMIRT  300
RCSERKYDLT CGQSCDKLLN CGRHRCERAC HVGPCDSCQV QVNASCFCKK TVESVICGEM  360
NVKGEVTAED GVFSCKLNCR KQLECGNHEC RDVCHPGPCG DCEFLPSRIK ACYCGKTSLE  420
EERQSCLDPI PSCSNICSKL LPCGLHNCNE MCHPGGCSPC LVQVRQKCRC GSTSRTVECY  480
KTVSETEKFI CAKPCGRKKN CGRHRCSERC CPLLNHAKND DLSGDSDLHF CHIPCGKRLR  540
CGQHSCETLC HTGHCPPCLE MIFTDLACAC GKTSIPPPLP CGTPVPSCQL PCSVPQPCGH  600
SATHGCHFGD CMPCSVPVEK KCIGGHVVLR NIPCGLKDIR CNKICGKTRC CGMHACARTC  660
HPEPCDNGGN ASVTGLRVTC GQTCGAPRRD CRHTCAALCH PSAPCPDQRC EFPLKITCSC  720
GRITATVPCD AGGSAGGFSG DSIYETSILQ KLPVPLQPVE SNGNRIPLGQ RKLTCDEECA  780
KLERKRVLQD AFDITPPNLD ALHFGENTAM TEVILDLYRR DPKWVLAVEE RCKFLVLGKA  840
RGSTISSLKL HIFCTMEKDK RDAVRLIAER WKLAVSNAGW EPKRFVVVYV TQKSKPPTRI  900
IGVKGVISVG APHAPAFDPL VDMDSRLVVC FFDLPREANI SALVLRFGGE CELVWLNDKN  960
ALAVFHDPAR AATAMRRLEH GSVYQGAVVV VQNPGQSPSL SNAWGIPGSS VQKGNPWNKA  1020
VVKELDDSWE TEDSPIGGSM WKTAKDSELI TPNRWTILES DKAVSVEPLA QTEGTSSSKA  1080
AGKQPEETSV VDDWEKVCD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006306627.10.0hypothetical protein CARUB_v10008145mg
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLR0ILT00.0R0ILT0_9BRAS; Uncharacterized protein
STRINGfgenesh1_pg.C_scaffold_10030980.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59552647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1