PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1504s0067.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NF-X1
Protein Properties Length: 884aa    MW: 99220 Da    PI: 8.3015
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1504s0067.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X117.49.5e-06250269120
             zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                          C +HkC ++CH G+CppC++
  Cagra.1504s0067.1.p 250 CNIHKCREICHDGECPPCRE 269
                          449***************85 PP

2zf-NF-X116.51.8e-05357376119
             zf-NF-X1   1 CGkHkCqklCHeGpCpp.Cp 19 
                          CG H+C + CH+GpC + C+
  Cagra.1504s0067.1.p 357 CGYHRCPERCHRGPCLEtCR 376
                          *****************997 PP

3zf-NF-X118.73.9e-06431455119
             zf-NF-X1   1 CG......kHkCqklCHeGpCppCp 19 
                          CG      +HkCq++CH GpC pCp
  Cagra.1504s0067.1.p 431 CGkrlrcrNHKCQSPCHQGPCAPCP 455
                          777777779***************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS01359087151IPR019786Zinc finger, PHD-type, conserved site
CDDcd060089.63E-5186234No hitNo description
PfamPF014222.5198215IPR000967Zinc finger, NF-X1-type
SMARTSM004388.1198216IPR000967Zinc finger, NF-X1-type
CDDcd060082.50E-9240288No hitNo description
PfamPF014226.1E-4250268IPR000967Zinc finger, NF-X1-type
SMARTSM004381.3E-4250269IPR000967Zinc finger, NF-X1-type
CDDcd060088.77E-7293333No hitNo description
PfamPF014220.047303321IPR000967Zinc finger, NF-X1-type
SMARTSM004380.038303322IPR000967Zinc finger, NF-X1-type
CDDcd060081.12E-8347396No hitNo description
PfamPF014220.0013357376IPR000967Zinc finger, NF-X1-type
SMARTSM004380.035357377IPR000967Zinc finger, NF-X1-type
CDDcd060081.44E-6400448No hitNo description
PfamPF014220.036410428IPR000967Zinc finger, NF-X1-type
SMARTSM004380.33410429IPR000967Zinc finger, NF-X1-type
CDDcd060089.10E-11427475No hitNo description
PfamPF014226.1E-4431455IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0034437456IPR000967Zinc finger, NF-X1-type
PfamPF01422180483494IPR000967Zinc finger, NF-X1-type
SMARTSM0043880494515IPR000967Zinc finger, NF-X1-type
PfamPF014224.8504514IPR000967Zinc finger, NF-X1-type
PfamPF0142243523532IPR000967Zinc finger, NF-X1-type
SMARTSM00438200523541IPR000967Zinc finger, NF-X1-type
PfamPF014220.078605616IPR000967Zinc finger, NF-X1-type
SMARTSM004389.5605636IPR000967Zinc finger, NF-X1-type
SMARTSM004380.053646664IPR000967Zinc finger, NF-X1-type
PfamPF014220.097647663IPR000967Zinc finger, NF-X1-type
SMARTSM004389.3709730IPR000967Zinc finger, NF-X1-type
PfamPF014222.9711723IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 884 aa     Download sequence    Send to blast
MLDMAGTATT EFRWKSPPQP PPQQQTFSES DSDSGSDSDN HQHRHNDVSN SIFKAYLDCH  60
SSSSPSSIDL AKIQSFLASS SSGAVSCLIC LERIKRTDPT WSCTSLCFAV FHLFCIQSWA  120
RQCLDLQAAR AVTRPSSNPT EPEAVWNCPK CRSSYQKSKI PRRYLCYCGK EEDPPADNPW  180
ILPHSCGEVC ERPLSSNCGH CCLLLCHPGP CASCPKLVKA KCFCGGVEDV RRCGHKHFSC  240
GDVCDKVLDC NIHKCREICH DGECPPCRER AIYKCCCGKV KEEKDCCERV FRCEASCENM  300
LNCGKHVCER GCHSGECGLC PYQGKRSCPC GKRFYQGLSC DVVAPLCGGT CDKVLGCGYH  360
RCPERCHRGP CLETCRIVVI KSCRCGGTKK QVPCHQELAC ERKCQRVRDC ARHACRRRCC  420
DGECPPCSEI CGKRLRCRNH KCQSPCHQGP CAPCPIMVTI SCACGETHFE VPCGTETNQK  480
PPRCRKLCHI TQLCRHGQNQ KPHKCHYGAC PPCRVLCDEE FPCGHKCTQR CHGPRPPPNR  540
EFMIKPTKKM LNIQAESTPG SPCPLCPELV WKPCVGHHLA AEKMMVCSDR TEFACDNLCG  600
NPLPCGNHYC SFTCHPLEIK NSSLDRRSES CEKCDLRCQK ERTPRCQHPC PRRCHPGDCP  660
PCKTLVKRSC HCGTMVHAFE CIYYNTLSEK EQTNARSCRG PCHRKLPNCT HLCPEICHPG  720
QCPLPEKCMK KVVARCKCLT LKKEWLCQDV QAAHRATGSD PKEVPKNQFG VGLLPCDSNC  780
KSKLQMAESV LQQRKVKEIE EKEEPSGKNA SKRRKRRERG QDIKETTRLQ KLAVATKRIL  840
MVVVLMAMLA AVSYYGYKGL LLLSDWMNEL EEQRQKSRRY PRI*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1504s0067.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2286900.0AK228690.1 Arabidopsis thaliana mRNA for hypothetical protein, clone: RAFL16-04-K08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006289514.20.0NF-X1-type zinc finger protein NFXL2
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLR0FJ280.0R0FJ28_9BRAS; Uncharacterized protein
STRINGCagra.1504s0067.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM109542730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors