PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1472s0017.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family SBP
Protein Properties Length: 180aa    MW: 20732.2 Da    PI: 9.7166
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1472s0017.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP134.92.5e-4260135277
                          -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                  SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                          Cqv++C+adl+eak+yhrrhkvCevh+ka++v++sg++qrfCqqCsrfhe++efDe+krsCrrrLa+hnerrrk++
  Cagra.1472s0017.1.p  60 CQVDRCTADLKEAKQYHRRHKVCEVHAKASSVFLSGVSQRFCQQCSRFHEIQEFDEAKRSCRRRLAGHNERRRKSS 135
                          **************************************************************************87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0375752.0E-611146IPR017238Squamosa promoter-binding protein
Gene3DG3DSA:4.10.1100.101.2E-3353121IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.18857134IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.49E-3859138IPR004333Transcription factor, SBP-box
PfamPF031103.1E-3260133IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0010321Biological Processregulation of vegetative phase change
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MEGRRTQGQG YLKSKSYLVE EEMEDDMDGE EEVVRNEEKK KGLMDRVIRG YSSGSSSRLC  60
QVDRCTADLK EAKQYHRRHK VCEVHAKASS VFLSGVSQRF CQQCSRFHEI QEFDEAKRSC  120
RRRLAGHNER RRKSSGESFG EGSGRRGGIT SQVYQNQERS RVEMTLPMPN SSFKRPQIR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A6e-4852133284squamosa promoter binding protein-like 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00634PBMTransfer from PK22320.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0849021e-129AY084902.1 Arabidopsis thaliana clone 12071 mRNA, complete sequence.
GenBankAJ0116321e-129AJ011632.1 Arabidopsis thaliana (ecotype Landsberg erecta) mRNA for squamosa promoter binding protein-like 4, partial.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006303186.11e-120hypothetical protein CARUB_v10010422mg
SwissprotQ9S7A99e-85SPL4_ARATH; Squamosa promoter-binding-like protein 4
TrEMBLR0I1J91e-120R0I1J9_9BRAS; Squamosa promoter-binding-like protein
STRINGfgenesh2_kg.1__4389__AT1G53160.21e-95(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86828118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53160.27e-70squamosa promoter binding protein-like 4