PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1418s0004.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bZIP
Protein Properties Length: 146aa    MW: 16848.2 Da    PI: 5.1095
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1418s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_138.13.3e-124793551
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51
                         k+ rr ++NRe+A+rsR++Kk++ eeL+e+v  L   N++Lk++l +
  Cagra.1418s0004.1.p 47 KKRRRTISNRESAKRSRLKKKKRFEELTEEVNRLNLRNQELKNRLAN 93
                         899***************************************77754 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.9E-1143114IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.764594IPR004827Basic-leucine zipper domain
PfamPF077161.1E-84593IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.4E-945108No hitNo description
SuperFamilySSF579598.04E-94795No hitNo description
PROSITE patternPS0003605065IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MFSTNMEPVH ICFDDAMITG DELNDILAFL QSDESDNPSE VVPVDEKKRR RTISNRESAK  60
RSRLKKKKRF EELTEEVNRL NLRNQELKNR LANVVSCGNE ISNENNRLKT ESVCLEIRLL  120
ELYRFLVAIQ SPISTTVTYI TELEI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14868RRRTISNRESAKRSRLKKKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006301725.11e-100hypothetical protein CARUB_v10022186mg
TrEMBLR0ID761e-100R0ID76_9BRAS; Uncharacterized protein
STRINGAT1G59530.17e-77(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122322432
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59530.11e-69basic leucine-zipper 4