PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1378s0012.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NAC
Protein Properties Length: 235aa    MW: 26996.9 Da    PI: 4.5961
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1378s0012.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.24.8e-5111227128
                  NAM   7 FhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                          FhPtdeelv++yLk+k++g+++el ++i+evd+yk+ePwdL  k  + +++ ewyfF +rd+ky++g r+nrat+ gyWk+tgkd++v+s
  Cagra.1378s0012.1.p   1 FHPTDEELVNYYLKRKINGQEIEL-DIIPEVDLYKCEPWDLAeKsFLPSRDPEWYFFGPRDRKYPNGFRTNRATRGGYWKSTGKDRRVTS 89 
                          9***********************.99**************84335556888************************************** PP

                  NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                           +++++g+kktLv+ykgrap+g +tdWvmheyrl
  Cagra.1378s0012.1.p  90 -QSRAIGMKKTLVYYKGRAPQGIRTDWVMHEYRL 122
                          .999****************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100556.6141145IPR003441NAC domain
PfamPF023658.5E-271122IPR003441NAC domain
SuperFamilySSF1019419.55E-601146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
FHPTDEELVN YYLKRKINGQ EIELDIIPEV DLYKCEPWDL AEKSFLPSRD PEWYFFGPRD  60
RKYPNGFRTN RATRGGYWKS TGKDRRVTSQ SRAIGMKKTL VYYKGRAPQG IRTDWVMHEY  120
RLDDKDCDDP SSLQDSYALC RVFKKNGICS ELESEQQLQM GQCSFTTASM EINSSNNYNN  180
NNEYETMSPE VGVSACVEEV VDDKDESWMQ FITDDAWDTS SNAAAAMGHG QGVY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-51114621169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00363DAPTransfer from AT3G17730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1378s0012.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0565950.0DQ056595.1 Arabidopsis thaliana no apical meristem family protein (At3g17730) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006298357.21e-177NAC domain-containing protein 86
SwissprotQ9FFI51e-82NAC86_ARATH; NAC domain-containing protein 86
TrEMBLR0I0451e-176R0I045_9BRAS; Uncharacterized protein (Fragment)
STRINGCagra.1378s0012.1.p1e-178(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM85042839
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17730.11e-159NAC domain containing protein 57
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]