PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1261s0013.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family LBD
Protein Properties Length: 183aa    MW: 19727.3 Da    PI: 7.0831
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1261s0013.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.45.7e-39111121101
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                          +C aCk+lrrkC+++C++apyf +e+ +++fa+vhk+FGasn +kll  +p ++r da+ +l yeA ar+rdPvyG+vg+i++lq+q+++
  Cagra.1261s0013.1.p  11 PCGACKFLRRKCVSECIFAPYFDSEEgTSHFAAVHKVFGASNASKLLMMIPASRRLDAVVTLSYEALARLRDPVYGCVGHIFALQHQVMN 100
                          7*********************998879************************************************************** PP

               DUF260  90 lkaelallkeel 101
                          l+aela+++++l
  Cagra.1261s0013.1.p 101 LQAELAYVQTQL 112
                          ********9885 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.71610112IPR004883Lateral organ boundaries, LOB
PfamPF031956.8E-3811109IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MSGGTNGGGG PCGACKFLRR KCVSECIFAP YFDSEEGTSH FAAVHKVFGA SNASKLLMMI  60
PASRRLDAVV TLSYEALARL RDPVYGCVGH IFALQHQVMN LQAELAYVQT QLTSLQRLLP  120
PNPQNNSQTE VASSFNAPLI ASSGDNKSNV LSSSPSHIHC MPQQQQQGKE DIEVSRESVD  180
LST
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006289084.11e-128hypothetical protein CARUB_v10002489mg
SwissprotO813222e-96LBD31_ARATH; LOB domain-containing protein 31
TrEMBLR0FHZ71e-128R0FHZ7_9BRAS; Uncharacterized protein
STRINGfgenesh1_pm.C_scaffold_60029705e-99(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00210.11e-89LOB domain-containing protein 31