PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1194s0049.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family LBD
Protein Properties Length: 265aa    MW: 28364.3 Da    PI: 7.6766
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1194s0049.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26093.52.4e-294107199
               DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                          +C++C+vlr++C++dC ++p++     p++q++++ +++k++G++ +++l++a p++ r+ +++sl+ eA+ r+ +P+yG+vg+++++++
  Cagra.1194s0049.1.p   4 SCNGCRVLRKGCSEDCSIRPCLawiksPEAQANATVFLAKFYGRAGLMNLINAGPDHLRPGIFRSLLHEACGRIVNPIYGSVGLLWSGNW 93 
                          6***************************************************************************************** PP

               DUF260  86 qleqlkaelallke 99 
                          ql+q ++e+++ +e
  Cagra.1194s0049.1.p  94 QLCQDAVEAVMKGE 107
                          ******99988766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.1333109IPR004883Lateral organ boundaries, LOB
PfamPF031951.9E-234103IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSEDCS IRPCLAWIKS PEAQANATVF LAKFYGRAGL MNLINAGPDH  60
LRPGIFRSLL HEACGRIVNP IYGSVGLLWS GNWQLCQDAV EAVMKGEPIT EIAADAATIG  120
QGPPLKIYDI RHNSKDDNSA AATGSTDLKR AKTRRAKRVA ALEKQAEYDG KSGGGEASHE  180
SSLSHQSEIV AAHEGESKES ESNASEVLAL SPPTVQGCGE IKLDLTLGLE PVSHAYDVVP  240
VKKRRIGVFG TCQKESTCKT ELML*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0860610.0AY086061.1 Arabidopsis thaliana clone 20907 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006299215.10.0hypothetical protein CARUB_v10015363mg
SwissprotQ9M8861e-175LBD41_ARATH; LOB domain-containing protein 41
TrEMBLR0I6Q70.0R0I6Q7_9BRAS; Uncharacterized protein
STRINGfgenesh2_kg.3__191__AT3G02550.11e-178(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77212741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.11e-168LOB domain-containing protein 41