PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.10957s0002.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family LBD
Protein Properties Length: 244aa    MW: 26755.5 Da    PI: 8.6707
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.10957s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26099.82.5e-312103197
                DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 
                           +C++C+vlr++C++ C+l+p++     p++q +++ +v+k+FG++ ++++++a+pe +r+++++sl++eA+ r+ +Pv+Gavg++++++
  Cagra.10957s0002.1.p   2 SCNGCRVLRKGCSETCILRPCLqwiesPESQGHATVFVAKFFGRAGLMSFISAVPELQRPALFQSLLFEACGRTVNPVNGAVGMLWTGN 90 
                           6**************************************************************************************** PP

                DUF260  85 qqleqlkaelall 97 
                           ++++q+++e++l+
  Cagra.10957s0002.1.p  91 WHVCQAAVETVLR 103
                           *******998876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.6651107IPR004883Lateral organ boundaries, LOB
PfamPF031952.7E-262101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSETCILR PCLQWIESPE SQGHATVFVA KFFGRAGLMS FISAVPELQR  60
PALFQSLLFE ACGRTVNPVN GAVGMLWTGN WHVCQAAVET VLRGGTLRPI SDLLESPSLM  120
ISSDESSAIL HRDVSRNGNN QNHRRFSISR SKTEMKDSSV NRKRFKSDSD LDLQVNHQGL  180
TLTGSAVPVP FVPPPPFCKA VNGDRPGSPS EESVTTSCWE NGMRGDNEYK RNKGDKKLLN  240
LFV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1229760.0AY122976.1 Arabidopsis thaliana unknown protein (At4g37540) mRNA, complete cds.
GenBankAY0721440.0AY072144.1 Arabidopsis thaliana unknown protein (At4g37540) mRNA, complete cds.
GenBankAB4738740.0AB473874.1 Arabidopsis thaliana ASL41 mRNA for ASYMMETRIC LEAVES2-like 41 protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006282697.10.0hypothetical protein CARUB_v10005616mg
SwissprotQ9SZE81e-155LBD39_ARATH; LOB domain-containing protein 39
TrEMBLR0GTF80.0R0GTF8_9BRAS; Uncharacterized protein
STRINGfgenesh2_kg.7__297__AT4G37540.11e-156(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82128122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37540.11e-148LOB domain-containing protein 39