PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1085s0083.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family B3
Protein Properties Length: 295aa    MW: 33542.9 Da    PI: 10.7611
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1085s0083.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.84e-1819110196
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrse 89 
                          ffkv  +   +++++  +p +fa++++ ++  + +++++  +g sWevk+  +k+++  ++ ++GW++Fv +n L  ++f++F+++g++ 
  Cagra.1085s0083.1.p  19 FFKVVNSVAISSENMRAIPHDFARKFSDNELLG-KMKIRVHWGSSWEVKI--SKNPRFyFMEKSGWEKFVTDNALGRNEFLTFTHKGKMH 105
                          7777755556666888**********8886655.9***************..******555569********************999888 PP

                          E..EEEE CS
                   B3  90 felvvkv 96 
                          f   v +
  Cagra.1085s0083.1.p 106 F--SVNI 110
                          8..5554 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.4E-1914112IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-1714111IPR015300DNA-binding pseudobarrel domain
CDDcd100171.05E-1618110No hitNo description
PfamPF023622.0E-1619110IPR003340B3 DNA binding domain
PROSITE profilePS5086312.90119114IPR003340B3 DNA binding domain
SMARTSM010197.6E-1819114IPR003340B3 DNA binding domain
SuperFamilySSF1019361.96E-14198292IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.839202294IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.0E-10202291IPR015300DNA-binding pseudobarrel domain
CDDcd100173.28E-7205290No hitNo description
SMARTSM010191.9E-11205294IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MACNPEFLRC YEERKQESFF KVVNSVAISS ENMRAIPHDF ARKFSDNELL GKMKIRVHWG  60
SSWEVKISKN PRFYFMEKSG WEKFVTDNAL GRNEFLTFTH KGKMHFSVNI MKQIGKEMLQ  120
PPQTRAFFAS SSRFKTEQGV KVVSSDLNSR GPRTAPESNG EGMCRRKLNF EKKKAEESQN  180
SKRTERVVGI QRDFAGTSSS SVAGFSIVIT KSYLTSLALP VSVVNFMPRV KSVVKIHHPN  240
GKKLWKVVFL VTRRGRLFSG GWRSLCMDYP VALGDTCKFT LINPHELLLV VTKP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2545971e-163AC254597.1 Capsella rubella clone CAP08-M05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006288334.10.0hypothetical protein CARUB_v10001579mg
SwissprotQ9LXE11e-137REM23_ARATH; B3 domain-containing protein REM23
TrEMBLR0FG330.0R0FG33_9BRAS; Uncharacterized protein
STRINGAl_scaffold_0006_8791e-145(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09780.11e-138B3 family protein