PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.10399s0008.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 344aa    MW: 39041.2 Da    PI: 6.8069
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.10399s0008.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.7e-05187206120
                           EEETTTTEEESSHHHHHHHH CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                           ++Cp C k+F+r  n++ H+
  Cagra.10399s0008.1.p 187 FTCPLCFKTFNRYNNMQMHM 206
                           89*****************9 PP

2zf-C2H213.10.0003271293123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           + C  Cgk F  k + ++H +++
  Cagra.10399s0008.1.p 271 FACRRCGKAFAVKGDWRTHEKNC 293
                           78*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.66187214IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.4E-5187206IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280189209IPR007087Zinc finger, C2H2
SuperFamilySSF576672.19E-6257291No hitNo description
Gene3DG3DSA:3.30.160.601.5E-5258291IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.767271291IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MSDPACVFNN GYVDYYDYSF NYSTSLSRIY DSHGNFYYPH HTTSPNINTN HNPTSPDSPP  60
LREALPLLSL SPIHKHQEPI AHHHEHYFME MTTETSSNSN FLDHELDHNE VTVDLHLGLP  120
NFGDGGSSSS DVVLDSTDDQ EHHQDQGVEF ALASDHDDGH GGLQRGNHLH HFWIPTPSQI  180
LMGPTQFTCP LCFKTFNRYN NMQMHMWGHG SQYRKGPESL RGTQPTAMLK LPCYCCAPGC  240
KNNIDHPRAR PLKDFRTLQT HYKRKHGVRP FACRRCGKAF AVKGDWRTHE KNCGKLWYCS  300
CGSDFKHKRS LKDHVKAFGN GHVPCCGIDH EEEDAASDVE HQE*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.10399s0008.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3118110.0AJ311811.2 Arabidopsis thaliana mRNA for WIP4 protein (At3g20880 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006300196.10.0zinc finger protein WIP4
SwissprotQ8W0300.0ZWIP4_ARATH; Zinc finger protein WIP4
TrEMBLR0HTF90.0R0HTF9_9BRAS; Uncharacterized protein
STRINGCagra.10399s0008.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20880.10.0WIP domain protein 4
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]