PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0753s0004.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family M-type_MADS
Protein Properties Length: 266aa    MW: 30390.3 Da    PI: 4.7288
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0753s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF41.61.6e-13654350
                         --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS.EEEEEE CS
               SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg.klyeys 50
                         ie++  r+v f  R+ gi+KK +ELS+LC+++ + +i+s+ + +l  ++
  Cagra.0753s0004.1.p  6 IEDEAARKVFFNERKRGIIKKLSELSTLCGVKTCGVIYSPYNpELEAWP 54
                         99********************************999998653777776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.5E-9155IPR002100Transcription factor, MADS-box
PROSITE profilePS5006613.512144IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.23E-17289IPR002100Transcription factor, MADS-box
CDDcd002666.56E-23480No hitNo description
PfamPF003195.2E-14647IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MKYSLIEDEA ARKVFFNERK RGIIKKLSEL STLCGVKTCG VIYSPYNPEL EAWPSREGAE  60
GVITEFMEVP VAKRTERMVS QEAFLRERIA SVQLQLQKLR AENRDFEIQN IMFGCLRGEI  120
DMSNLGELDN QDLTSFLDKC IDKLICRAKH LRENGESSSP LSLLPPSRPL VVPDLDVVQV  180
GDNDRENEIQ NHQNLVQRQT DFLIEYYGQI QQKIHKFNVN MNVNMDLNFN SNSNGRMSLD  240
LNQIPHAEED EDVPSMEGSH PPTYN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0753s0004.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023637088.11e-142MADS-box transcription factor PHERES 2 isoform X2
TrEMBLR0FH891e-175R0FH89_9BRAS; Uncharacterized protein
STRINGCagra.0753s0004.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65300.12e-66AGAMOUS-like 38