PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0698s0021.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family LBD
Protein Properties Length: 236aa    MW: 24970.2 Da    PI: 8.1378
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0698s0021.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260128.82.4e-4091091100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                          +C aCk+lrrkC+++C++apyf +eq ++ fa+vhk+FGasnv+kll ++p ++r+da+ +++yeA+ar+rdP+yG+v++i++lqqq+ +
  Cagra.0698s0021.1.p   9 PCGACKFLRRKCVPGCIFAPYFDSEQgSAYFAAVHKVFGASNVSKLLLHIPVHRRSDAVVTICYEAQARIRDPIYGCVAHIFALQQQVVN 98 
                          7***********************998899************************************************************ PP

               DUF260  90 lkaelallkee 100
                          l+ae+++l+++
  Cagra.0698s0021.1.p  99 LQAEVSYLQAH 109
                          ******99986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.8668110IPR004883Lateral organ boundaries, LOB
PfamPF031952.3E-399107IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
SGSGGGGGPC GACKFLRRKC VPGCIFAPYF DSEQGSAYFA AVHKVFGASN VSKLLLHIPV  60
HRRSDAVVTI CYEAQARIRD PIYGCVAHIF ALQQQVVNLQ AEVSYLQAHL ASLELPQPQT  120
RPPPLSQPQP LFFTPPPPFS IADLPASVSP LPSTYDLASI FDQTTPSSAA WGTQQRRFVD  180
PRQQYGVSSS SSSAAAIGLG GGNSDLQALA HELLHRQGSP PPAATDDSPS RSMSR*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00314DAPTransfer from AT2G45420Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0257160.0BT025716.1 Arabidopsis thaliana At2g45420 mRNA, complete cds.
GenBankAB4738530.0AB473853.1 Arabidopsis thaliana ASL20 mRNA for ASYMMETRIC LEAVES2-like 20 protein, complete cds.
GenBankAF4478910.0AF447891.1 Arabidopsis thaliana LOB DOMAIN 18 (LBD18) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006295913.11e-170hypothetical protein CARUB_v10025050mg
SwissprotO221311e-123LBD18_ARATH; LOB domain-containing protein 18
TrEMBLR0G0T41e-170R0G0T4_9BRAS; Uncharacterized protein
STRINGfgenesh2_kg.4__2737__AT2G45420.11e-129(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45420.11e-111LOB domain-containing protein 18